RNA id: TCONS_00006784


Basic Information

Item Value
RNA id TCONS_00006784
length 631
RNA type processed_transcript
GC content 0.50
exon number 2
gene id XLOC_003461
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24994705 ~ 25043214 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGATGATTGGGTGGAAATCCTGGAGCCTCGTCTCAGAGAGTACATGTATGTGAATCTGACCACGGGAATATGTGGTTGGGAACCGcccaaaaatgtattaatccgCCCAGCTGATCACAACCAATGGTGGGAACTTTTTGACCGTGTGACTGGCAGGTACTACTACTTCAACTCTGCTGGCAGTATCACAGTGTGGCATAGACCGCAGGGGGCGGATATTATCCCTCTGTCTTCCCTCCAGGCCATGAAACGCAACACAACGTTAGAACATAAAACTGATGAGGACACTAAGGAAAGGCAACATGGGAATCAGTCCACAGGCAGTCAAGATAGACACACCCCATTACCACCCGTGGAGCCCTGCACTAAAGAGCCAGAATGTGCCAGCAAAGAGCCTAAAGAACCAGAAATGGACAACAGACAGAAGCCAGACATCCACGTTTCAGACATCAACAAAGACTCACTCAGGCTGGAACTGTAGAGCCAAAGGCTCAGTTGGACAGCAGAAAGAAAGGTATAGTAGACAACAGAACGGGTTCCCTTGGCCCTCATCGTCACATAGCCAGCGAGACCAATTTACAGGGAGGTGATGGTGCTACCTACCAGCTTTCCTACGCCACCCTCCGTCAGC

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-4 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Orthologous to human ARHGAP39 (Rho GTPase activating protein 39).

Ensembl:

ensembl_id ENSDART00000161832

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006773 lncRNA upstream 104663 24900479 ~ 24905875 (+) False XLOC_003459
TCONS_00006744 lncRNA upstream 666234 24343328 ~ 24344304 (+) False XLOC_003446
TCONS_00008611 lncRNA upstream 666522 24339396 ~ 24344016 (+) False XLOC_003446
TCONS_00008401 lncRNA downstream 28216 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00008612 lncRNA downstream 150611 25181857 ~ 25189277 (+) False XLOC_003466
TCONS_00008613 lncRNA downstream 150846 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA downstream 180410 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006796 lncRNA downstream 181294 25212540 ~ 25226926 (+) True XLOC_003466
TCONS_00006775 mRNA upstream 17313 24907469 ~ 24993225 (+) False XLOC_003460
TCONS_00006778 mRNA upstream 18240 24966182 ~ 24992298 (+) False XLOC_003460
TCONS_00006776 mRNA upstream 40881 24925434 ~ 24969657 (+) False XLOC_003460
TCONS_00006777 mRNA upstream 44175 24957858 ~ 24966363 (+) False XLOC_003460
TCONS_00006771 mRNA upstream 104274 24900123 ~ 24906264 (+) False XLOC_003459
TCONS_00006786 mRNA downstream 12836 25044082 ~ 25063586 (+) True XLOC_003462
TCONS_00006787 mRNA downstream 33273 25064519 ~ 25139061 (+) False XLOC_003464
TCONS_00006789 mRNA downstream 69974 25101220 ~ 25140425 (+) False XLOC_003464
TCONS_00006791 mRNA downstream 80600 25111846 ~ 25140425 (+) False XLOC_003464
TCONS_00006790 mRNA downstream 80600 25111846 ~ 25140425 (+) False XLOC_003464
TCONS_00006779 other upstream 27040 24980919 ~ 24983498 (+) True XLOC_003460
TCONS_00006774 other upstream 107328 24901878 ~ 24903210 (+) True XLOC_003459
TCONS_00006769 other upstream 127193 24881309 ~ 24883345 (+) True XLOC_003457
TCONS_00006746 other upstream 429424 24580579 ~ 24581114 (+) True XLOC_003447
TCONS_00006738 other upstream 669807 24339396 ~ 24340731 (+) False XLOC_003446
TCONS_00006785 other downstream 7027 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006788 other downstream 64951 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006802 other downstream 265130 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006814 other downstream 446497 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006817 other downstream 449861 25481107 ~ 25482970 (+) False XLOC_003476

Expression Profile

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