RNA id: XM_039819652.1


Basic Information

Item Value
RNA id XM_039819652.1
length 828
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC120570967
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 35953855 ~ 35955159 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGTGATCATATTTCCTTGTTCCCTCCCCTTCAGAGCTACAGTTTGCAGATGGGTGTAACCAACATGCTGGGGCAAGTACAACTGCGTATCACATGCTTTTATTACATCACAGCTGAGACTAGTCTCACTTCTCAGGAAGTGAGACAcaagacagtcagacagtcgtcactgagcgagaggtgaaatggcgcagaaaggagttgagctggaccgggaaaccttctcttgttccatctgtctggatctactgaaggatccggtgacaATTAactgtggacacagctactgcatgaactgtattaaaagtCACTGGGATGAAGAGGATTGTAAGTACATCTACAGCTGCCCTGAGTGCAGGAAGACgttcacaccgaggcctgtACTGGTGAAAAGCACCATGTTGGCAGctttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcaccgGGAGAAAACTCAAAGCCATCAAATCCTGCCTGGTTTGTCTGATCTCTTATTGTGAGAAACACCTTCAGCCTCATTTTGAATCTCCTGCTTTtgagaaacacaagctggtggagccgtccaagaagctccaggagaacgtctgctctcgtcatgatgaggtgatgatCTCCCGTCTACCTATCCGAACTCATTCATCCGTACACCCTGCCCAGAAGCCTAAGATCACACGACCAGGTTCTGCTGGTAGCCCCTCGTGCCAGACtacagcagagagaaaagagCGCGGGACCTCGTCTGTGGAACTCCCTGCCTTTAGAGATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641228.1 lncRNA upstream 14505 35780811 ~ 35939350 (+) False LOC120571440
TU186886 lncRNA upstream 14533 35935624 ~ 35939322 (+) True LOC120571440
TU186875 lncRNA upstream 20019 35837179 ~ 35933836 (+) True G138680
TU187054 lncRNA upstream 111246 35824676 ~ 35842609 (+) True G138813
TU186921 lncRNA upstream 116715 35808155 ~ 35837140 (+) True G138726
TU187073 lncRNA downstream 5174 35960333 ~ 35996309 (+) False G138819
TU187076 lncRNA downstream 13435 35968594 ~ 35968983 (+) True G138821
TU187063 lncRNA downstream 16678 35971837 ~ 35998150 (+) False G138817
TU187064 lncRNA downstream 16678 35971837 ~ 35998150 (+) False G138817
TU187065 lncRNA downstream 16678 35971837 ~ 35998150 (+) False G138817
XM_039820382.1 mRNA upstream 149972 35803314 ~ 35803883 (+) False LOC120571439
XM_039819649.1 mRNA upstream 395303 35518975 ~ 35558552 (+) False LOC120570963
XM_039820368.1 mRNA upstream 438073 35515121 ~ 35515782 (+) True LOC120571424
XM_039819648.1 mRNA upstream 455363 35496877 ~ 35498492 (+) True LOC120570962
XM_039820328.1 mRNA upstream 486687 35447774 ~ 35467168 (+) True LOC120571395
XM_039820380.1 mRNA downstream 1258 35956417 ~ 35958468 (+) True LOC120571435
XM_039820386.1 mRNA downstream 24734 35979893 ~ 36004234 (+) True riok1
XM_039820385.1 mRNA downstream 54828 36009987 ~ 36011497 (+) False LOC120571445
XM_039819654.1 mRNA downstream 193362 36148521 ~ 36153226 (+) True LOC120570972
XM_039820384.1 mRNA downstream 234516 36189675 ~ 36195349 (+) True LOC120571442
TU186903 other upstream 134889 35803304 ~ 35818966 (+) True LOC120571439
TU187041 other upstream 229453 35706900 ~ 35724402 (+) True G138806
TU186887 other upstream 456237 35439291 ~ 35497618 (+) True G138692
TU186837 other upstream 568392 35378839 ~ 35385463 (+) False mindy1
TU186852 other upstream 576817 35372011 ~ 35377038 (+) False LOC120570961
TU186870 other downstream 110212 36065371 ~ 36257319 (+) True G138676
TU186931 other downstream 151558 36106717 ~ 36215827 (+) False LOC120571442
TU186906 other downstream 182988 36138147 ~ 36215671 (+) True G138711
TU186888 other downstream 274171 36229330 ~ 36247084 (+) True G138693
TU186858 other downstream 383251 36338410 ~ 36348627 (+) False gabpb2a

Expression Profile