RNA id: XM_039819660.1


Basic Information

Item Value
RNA id XM_039819660.1
length 1820
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC120570977
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 37056794 ~ 37061670 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGTGAAGAGAGAGgagtgtagctccagtgtggaccagcaggagccagagccccccccacacattaaagaggaacaggaggaactgtggagcagtcaggagggagagcagcttcaagggctggaggaggctgatatcaccaagttcccattcactcctgtccctgtgaagagtgaagatgatgaagaggaagctcagtcctcacagcttcatcaaagacaaactcaacacatggaaacagaagctgatggagaggactgtggaggaccagaaccagccaggaactcacatccacttttacaaccagagccAGAAGACCAGACTGTAGACTCTTCTGATCCTGAGACTGATgccagtgctgattggaaggagaccagagaacctcagtcagttTTAAACTTTCTGAAAAATGATTCAACATGTAAGAAaccattcagctgctctgagtgtgggaaaagatttggcTTCATGTCACCTCTGAAGAAACACATGCAAACTCACACAGGAAAGAAACCATTCAGCTGCTCTTTTTGTAATATATCTTTTTCATGGAGAGGAATTTTACGGTCACATATggtagtccacacaggagaaaaacctttcagctgctgtgtttgtaataaatcttttacacagagtggaGCTTTAAAGACGCACATGAGAATCcatacaggagaaaaacctttcagttgctcagtttgtaagacatcttttacacagagaggagatttacagaaacacatgagaatccacacaggagaaaaacctttcagctgctcaattTGTAAAAAATCATTTACACAGAGTGGAAGTTTACGGTCACACATgaaaactcacacaggagagaaaagtttcagctgcagtgtttgtaaaaAAAGATTTGCCTGCCGTTCTCATGTCCAAagacataaatgtgttggtccgatggcaacagaagctgatgtagagtactgtggaggaccagatcCAGCCAGAGACTGAAGatcagactggagactcttctgagcctgagactgatgacatgGAGTAACGTTTGTGCCTTTAAGTCTAAGCAAAACTTCATCAAAATTAGTATCAAACAAAAGTCTTTATGTTAGACCCAGctgcagtgggtcagcggaccgctaacgttagaccgaAGTCTTATAGGACACCTATTAAAGGAGTTCAGGtgaaactgtttactgttctaaatgaatatgctacattaaaacaaaaaggaaatgtgaatcTATTATTTCCAACACTGTTTGGTGCTTCAGtgcctcgtcctctgaacaccacaggatggcgctaacacacacgctgtaagaagtaagttatactgcccctctgaactgactttgtttctcagcgaataacgttatctcactgTTCAGGGCGTAGCCAGGTTtacagagttattgtttggaaaaactttagatttcgattgtaaaaccaattaaaatataaacttatgttttaaaaatgttatttggcaagtgaccatggtatgagcaggttaatgcccttcgaggtgtcaattgtcaggtattaatggaagACGGCGAGGCGTTAACCGTCCCATGTGTACATATGTACATATTTATTGTTTCATTATTACTGTTATAATAACAGTATTATGTGCTGATGTTCTGCTGTTtttattatggcttttttttatatatatacagtttagTGTATTACGTGGTTTGTGTCTCAGTAATCATCAGTggaggaatgtaactaagtacatttactccagtactgtacttaagtccaaatgttgaggtacttgtactttacttgaatcttttcttttcatgccattttctacttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187747 lncRNA upstream 27002 37029320 ~ 37029792 (+) True G139257
XR_005641181.1 lncRNA upstream 114323 36938272 ~ 36942471 (+) True LOC120571091
XR_005641169.1 lncRNA upstream 125238 36922735 ~ 36931556 (+) True LOC120571079
TU187688 lncRNA upstream 205860 36793758 ~ 36850934 (+) False G139210
TU187569 lncRNA downstream 55716 37117386 ~ 37187736 (+) True G139141
XR_005641178.1 lncRNA downstream 84304 37145974 ~ 37151893 (+) True LOC120571088
TU187777 lncRNA downstream 131194 37192864 ~ 37193419 (+) True G139286
XR_005641184.1 lncRNA downstream 150226 37211896 ~ 37219933 (+) False LOC120571093
XR_005641183.1 lncRNA downstream 150312 37211982 ~ 37219933 (+) True LOC120571093
XM_039819762.1 mRNA upstream 49912 37004607 ~ 37006882 (+) True LOC120571060
XM_039819773.1 mRNA upstream 67097 36987953 ~ 36989697 (+) True LOC120571069
XM_039819759.1 mRNA upstream 72640 36962603 ~ 36984154 (+) True LOC120571057
XM_039819767.1 mRNA upstream 294859 36748017 ~ 36761935 (+) True LOC120571063
XM_039819753.1 mRNA upstream 295893 36758305 ~ 36760901 (+) True LOC120571052
XM_039819661.1 mRNA downstream 13015 37074685 ~ 37096687 (+) True LOC120570978
XM_039819751.1 mRNA downstream 32756 37094426 ~ 37095869 (+) True LOC120571050
XM_039819662.1 mRNA downstream 75187 37136857 ~ 37141078 (+) True LOC120570979
XM_039819664.1 mRNA downstream 90362 37152032 ~ 37187178 (+) True LOC120570980
XM_039819764.1 mRNA downstream 146042 37207712 ~ 37225453 (+) True LOC120571061
TU187538 other upstream 72 37047001 ~ 37056722 (+) True G139139
TU187744 other upstream 67156 36987962 ~ 36989638 (+) False LOC120571069
TU186869 other upstream 524351 36529301 ~ 36532443 (+) False LOC120571613
TU186859 other upstream 540212 36512606 ~ 36516582 (+) True G138668
TU187150 other upstream 550860 36493103 ~ 36505934 (+) True G138883
TU187611 other downstream 6088 37067758 ~ 37116471 (+) True G139152
TU187560 other downstream 300273 37361943 ~ 37375707 (+) False G139141
XR_005641164.1 other downstream 338622 37400292 ~ 37411180 (+) False LOC120571062
TU187637 other downstream 381722 37443392 ~ 37446584 (+) True G139164
TU187628 other downstream 450039 37511709 ~ 37523132 (+) False LOC120570989

Expression Profile