RNA id: XM_039819661.1


Basic Information

Item Value
RNA id XM_039819661.1
length 2097
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC120570978
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 37074685 ~ 37096687 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aTGATGGAGAGGAAGATACAGTTCCACAACatttctctgtatgtgtttcctgcagatgttgagcagctgttggtggttaaagaagaggttccccctgagcagcagaagtgtagctccagtgtggaccagcaggagccagagcccccccgacacattaaagaggaactgtggagcagtcaggaaggagagcagcttcaagggctggaggaggctgatatcaccaagttcccattcactcctgtccctgtgaagagggaagatgatgaagagaaagcTCAATCCTCACAGCTTcctcagagacaaactcaagACATGGAAAccgaagctgatggagaggactgtggaggaccagaaccagccaggaactcgcctccacatccacttttacaatcAGAGACTAAGGACcggactggagactcttctgaacctgagactgaagacagtgctgattggaaggagacaaGAGAAcatcagtcagctttaaactctctgaaacatgattcaagatgtatgaaaacattcagctgctctaAGTGTGGGAAAATATTTGGCCAAAAGGTAcatctgaagagacacatgattACTCACACAGGGGAGAAACCTTTTAgatgctcagtctgtaagaaatattttacacaacgtgtacatttacaaagacacatgagaatccacacaggagagaagcctttcAGCTGCCCTGAGTGTGGTAAAGCTTTCTCTGATAGGGGAATCCTGAAGACCCACATGATGACTCATtctggagaaaaacctttcagctgttCAGTTTGTAAGAAAACGTTTTTAATGTCTGGAATTTTACGGttacacatgagaatccacacaggagaaaagcctttcagctgcagtgtttgtaataCATCTTTTCGACATAGTGGAAGTTTACAGTCACatatgagaatccacacaggagaaaaaccttttagctgctctgagtgtggtagAGCTTTCTCTATACGTGGAACCCTGAAGGCACACATGATAACTCATtctggagaaaaacctttcagctgctcagtctgtaagaaatcttttacacagagaggaagtTTAAGGTCACACATGtcagtccacacaggagagaaaagattcagctgcagtgtttgtaacaaaagatttgcctggAGTTCTGATGTCAAAagacataaatgtgttggtcagATGGAAACGGAAGCTGATGGTGAGGACTGttgaggaccagaaccagccaggaacccACATCCACATCTTTTACAACCAAAGACTGAAGACCtcactggagactcttctgaacctgagactgatgacagtgctgattggaaggagaccagagaacctcagtcagctttaaactctctgaaacatgattcaagatgtaagaaaacattcagctgctccGAGTGTCGGAAAAGATTTGGCCTCAAGACACATCTGATGAAACCCATAACTCGCAGAAGAAAAACCTTTCAATTGCTCATTTTTGATAAAGAATTTGCAGATAAGTATTATCTGAATATACACCTTAGTGTTCACACAGAAGACAAagctttcagctgctctgagtgtggcgAATCTTTAACTGAAAATGGACACTTGAAgacacacatgagaactcataCTGCAGTGTTTGTGACAAAAGATTCAACTGGTGCACCAGACTCAAAACCCATCAGTCTATATGTAACGGCTTGTATATAGGTTCTGTTAAATTTCTGCATAAATGCTCATAAATGGGGACAGCACCGTCTGCTGGCGTCACTTTCACATTGCGCCGCTGCGCTAAAACTAACAAATTATGGGGAATCCACTGCTGAACTCCTGATAATTGCATGTTCAACGCTGCAAAGAATTTTAGACAAAATTCTTTAAAGCCCACCacacaatattttattttactgtatttgttttgtgaTGTAATTTAGAGATGAATGTCGTTTGTTTGGCGTCAGGTGAGTCATTAATCTAAGCTGAATGTTAAATGTAGCTTATTTTGCATGGCTTCTAATGCTATTCCTCCATCTGattttatgtgtgttgtgtagggCTGTTTataattcttcttcttcttcttcttattattattattataataataataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187747 lncRNA upstream 44893 37029320 ~ 37029792 (+) True G139257
XR_005641181.1 lncRNA upstream 132214 36938272 ~ 36942471 (+) True LOC120571091
XR_005641169.1 lncRNA upstream 143129 36922735 ~ 36931556 (+) True LOC120571079
TU187661 lncRNA upstream 237445 36809209 ~ 36837240 (+) True G139185
TU187569 lncRNA downstream 20699 37117386 ~ 37187736 (+) True G139141
XR_005641178.1 lncRNA downstream 49287 37145974 ~ 37151893 (+) True LOC120571088
TU187777 lncRNA downstream 96177 37192864 ~ 37193419 (+) True G139286
XR_005641184.1 lncRNA downstream 115209 37211896 ~ 37219933 (+) False LOC120571093
XR_005641183.1 lncRNA downstream 115295 37211982 ~ 37219933 (+) True LOC120571093
XM_039819660.1 mRNA upstream 13015 37056794 ~ 37061670 (+) True LOC120570977
XM_039819762.1 mRNA upstream 67803 37004607 ~ 37006882 (+) True LOC120571060
XM_039819773.1 mRNA upstream 84988 36987953 ~ 36989697 (+) True LOC120571069
XM_039819759.1 mRNA upstream 90531 36962603 ~ 36984154 (+) True LOC120571057
XM_039819767.1 mRNA upstream 312750 36748017 ~ 36761935 (+) True LOC120571063
XM_039819662.1 mRNA downstream 40170 37136857 ~ 37141078 (+) True LOC120570979
XM_039819664.1 mRNA downstream 55345 37152032 ~ 37187178 (+) True LOC120570980
XM_039819764.1 mRNA downstream 111025 37207712 ~ 37225453 (+) True LOC120571061
XM_039819755.1 mRNA downstream 162584 37259271 ~ 37260428 (+) True LOC120571054
XM_039819665.1 mRNA downstream 183034 37279721 ~ 37280734 (+) True LOC120570982
TU187538 other upstream 17963 37047001 ~ 37056722 (+) True G139139
TU187744 other upstream 85047 36987962 ~ 36989638 (+) False LOC120571069
TU186869 other upstream 542242 36529301 ~ 36532443 (+) False LOC120571613
TU186859 other upstream 558103 36512606 ~ 36516582 (+) True G138668
TU187150 other upstream 568751 36493103 ~ 36505934 (+) True G138883
TU187560 other downstream 265256 37361943 ~ 37375707 (+) False G139141
XR_005641164.1 other downstream 303605 37400292 ~ 37411180 (+) False LOC120571062
TU187637 other downstream 346705 37443392 ~ 37446584 (+) True G139164
TU187628 other downstream 415022 37511709 ~ 37523132 (+) False LOC120570989
TU188274 other downstream 771222 37867909 ~ 37873124 (+) True G139586

Expression Profile