RNA id: XM_039819666.1


Basic Information

Item Value
RNA id XM_039819666.1
length 1269
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC120570984
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 37327579 ~ 37330460 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCTCACCTATAAAAATGTTGAGCACACCGCGATCTCGGTTGTCAGAGGTTTCGTCGCCAACAACAGAGATTTTCTTTCCACGGATCTCTTGCAGCACTTTTTGCATGTGCTGGTCAAAGACCCGGGGCAGGTGGGTCTGCCTGAGGGCCCTACACCGAATGTGTGTtctgtccaagaagctgatggagaggactgtggaggaccagaaccagccaggaactcacatccaaaTCCAcgtttacaaccagagactgaagacccaGCTTCAGACTTTCCTGAACCTGGACAGCTATCTAGCTTTGCCCTGGCCTCACAATGTTGCCAACAAAGAAATGAGagcagagaacctcagtcaggttTGAACTCTCAGAAAAAGAGCAGGTATCATTCTCGTGAGAAATCATTTCGCTGCTCCGAGTGTGGGAAACAATTCAACCAAAACTCAAACCTGAAGACACACATgcgaactcacacaggagagaagccgttCAGCTGCCCCTTCTGCGCTAAAAGGTTTGGCCAGAAGGCACATCTGCAGAACCATTTGAAATGTCACACGGGCGAAAAGCCGTACAGGTGTTCAGTCTGCGGCCGGCGTTTTTCGAGGTTTGAGCATATGAAGTTACACATGAGAACGCACACAGGGGAGCGACCATTCAGCTGTGCCAGTTGTGGAAAAAGATTCACCTGGCTTCATCAGTTCAAAACGCACAAGTGTGGGGGTAAATCGTCCCGGCTGCAGGAGGAACCGTGGAGCGGTCAGGaaggagagcagcttcaagggctggaggaggctgatatcaccaagttcccattcactcctgtccctgcaAAGAGCgaggatgatgaagaggaagctcagtcctcacagcttcatcaaagtCAATCACATCCAGACAGTTTTGACTCACATGGACTCGTGTGTAACCCATTCATTGGACAGTTCTGGTGATGTAACCCTGTTGTCTTGAAGGCTACCTTTACACCGCTacatttttgagttttgagccaaaagtgatCTCCGGTCACCAAGTGCTTTTAGCTCCAGGAGAAGAACTAAGgcttcctttctcccttttcactaGGCCCTGTTCCCAAAATGAATACTGTTTGGTGTCTGCTTAATTCTTAATTTCAGTGTAATGTTCATGTTATTGTTTCAGtttgttactttattatttgacaTAGGCATGTTCAGCAGGTTTATATGGAGTTAGAATCATgccaaaacctcacacacacacaaaacgtgttttactcacgccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641171.1 lncRNA upstream 6684 37309014 ~ 37320895 (+) True LOC120571081
TU187629 lncRNA upstream 19310 37306166 ~ 37308269 (+) True G139160
TU187631 lncRNA upstream 19310 37306166 ~ 37308269 (+) False G139160
TU187633 lncRNA upstream 20822 37306166 ~ 37306757 (+) False G139160
TU187786 lncRNA upstream 74016 37253029 ~ 37253563 (+) True G139292
TU187800 lncRNA downstream 16249 37346709 ~ 37348394 (+) True G139303
TU187805 lncRNA downstream 83888 37414348 ~ 37415199 (+) True G139308
TU187804 lncRNA downstream 116254 37446714 ~ 37449255 (+) True G139307
TU187542 lncRNA downstream 211779 37542239 ~ 37543053 (+) True G139140
TU187638 lncRNA downstream 223031 37553491 ~ 37554500 (+) True G139165
XM_039819665.1 mRNA upstream 46845 37279721 ~ 37280734 (+) True LOC120570982
XM_039819755.1 mRNA upstream 67151 37259271 ~ 37260428 (+) True LOC120571054
XM_039819764.1 mRNA upstream 102126 37207712 ~ 37225453 (+) True LOC120571061
XM_039819664.1 mRNA upstream 140401 37152032 ~ 37187178 (+) True LOC120570980
XM_039819662.1 mRNA upstream 186501 37136857 ~ 37141078 (+) True LOC120570979
XM_039819752.1 mRNA downstream 45332 37375792 ~ 37378767 (+) True LOC120571051
XM_039819668.1 mRNA downstream 54782 37385242 ~ 37400200 (+) True LOC120570985
XM_039819765.1 mRNA downstream 69832 37400292 ~ 37422427 (+) True LOC120571062
XM_039819766.1 mRNA downstream 69832 37400292 ~ 37411335 (+) False LOC120571062
XM_039819776.1 mRNA downstream 105796 37436256 ~ 37437358 (+) True LOC120571071
TU187611 other upstream 211108 37067758 ~ 37116471 (+) True G139152
TU187538 other upstream 270857 37047001 ~ 37056722 (+) True G139139
TU187744 other upstream 337941 36987962 ~ 36989638 (+) False LOC120571069
TU186869 other upstream 795136 36529301 ~ 36532443 (+) False LOC120571613
TU186859 other upstream 810997 36512606 ~ 36516582 (+) True G138668
TU187560 other downstream 31483 37361943 ~ 37375707 (+) False G139141
XR_005641164.1 other downstream 69832 37400292 ~ 37411180 (+) False LOC120571062
TU187637 other downstream 112932 37443392 ~ 37446584 (+) True G139164
TU187628 other downstream 181249 37511709 ~ 37523132 (+) False LOC120570989
TU188274 other downstream 537449 37867909 ~ 37873124 (+) True G139586

Expression Profile