RNA id: XM_039819670.1


Basic Information

Item Value
RNA id XM_039819670.1
length 982
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC120570988
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 37478550 ~ 37492543 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCAGACGCTATTGGGGATGATCACACTGATAATCAGCCACACGGAGGAGgagaccagagaacctcagtcagctttaaactctctgaaacatgattcaagacGTAAGAAaccattcagctgctctgagtgtgggaacAGATTTGGCTCCAGGAGAAATCTAAAtagacacatgagaactcacacaggagaaaaacctttctgctgctctgagtgtgggagaagATTTGGCCACAAGCAAcatctgaagagacacatgataactcacacaggagaaaaacctttcagctgctcagtgtgTAAGAActcttttacacagagtggaAGTTTAAGGAAGCACATGgtaactcacacaggagagaaatctttcagctgctctgagtgtgggagaagGTTTGGCCAAAGGGGAcatctgaagagacacatgataactcacacaggagagaaagctTTCAGCTGCccagtctgtaagaaatctttgGCGAATAGGGGAAGTGTAAAggcacacatgagaatccacacaggagaggaaccatttagctgctctgagtgtggaaAACGATTTAGTCAAAACTCAAATTTGAAGACTCACATGAGAACTcatacaggagagaaacctttcagctgctctgtctgtaagaaatcttttagaCGGAGTGGCCATTTAAAATATCACATGAAACAACACACGAGAGAGGAACCATCTACTTCCTGTGTTAGTGACATCAGAACGCAGTAGGAGTggagctccagtgtggaccaggaGCAGCCAGAGAATCTCAGCCAGGTCGGAACTCTCTGAACCATAGAAATACAATGTCGGCAGATGTACGACATGATATGCTCCACTAAAGGCACGTTCAGCACTAATACGACGGCTCAACGTTTAAAAACATGGAAAGAGCAatgcttaaaggaatatttcaccgttggaaagacgaatatatctttaaattgggtaacttatgtagtagaaatgtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187804 lncRNA upstream 29295 37446714 ~ 37449255 (+) True G139307
TU187805 lncRNA upstream 63351 37414348 ~ 37415199 (+) True G139308
TU187800 lncRNA upstream 130156 37346709 ~ 37348394 (+) True G139303
XR_005641171.1 lncRNA upstream 157655 37309014 ~ 37320895 (+) True LOC120571081
TU187633 lncRNA upstream 171793 37306166 ~ 37306757 (+) False G139160
TU187542 lncRNA downstream 49696 37542239 ~ 37543053 (+) True G139140
TU187638 lncRNA downstream 60948 37553491 ~ 37554500 (+) True G139165
TU187829 lncRNA downstream 62208 37554751 ~ 37555441 (+) False G139326
TU187826 lncRNA downstream 62493 37555036 ~ 37555916 (+) True G139326
TU187827 lncRNA downstream 63022 37555565 ~ 37555916 (+) False G139326
XM_039819669.1 mRNA upstream 1959 37458588 ~ 37476591 (+) True LOC120570987
XM_039819776.1 mRNA upstream 41192 37436256 ~ 37437358 (+) True LOC120571071
XM_039819765.1 mRNA upstream 56123 37400292 ~ 37422427 (+) True LOC120571062
XM_039819766.1 mRNA upstream 67215 37400292 ~ 37411335 (+) False LOC120571062
XM_039819668.1 mRNA upstream 78350 37385242 ~ 37400200 (+) True LOC120570985
XM_039819671.1 mRNA downstream 5091 37497634 ~ 37522677 (+) True LOC120570989
XM_039819769.1 mRNA downstream 14479 37507022 ~ 37508696 (+) True LOC120571065
XM_039819672.1 mRNA downstream 35162 37527705 ~ 37551898 (+) True LOC120570990
XM_039819674.1 mRNA downstream 120578 37613121 ~ 37616487 (+) True LOC120570991
XM_039819758.1 mRNA downstream 845894 38338437 ~ 38340755 (+) True LOC120571056
TU187637 other upstream 31966 37443392 ~ 37446584 (+) True G139164
XR_005641164.1 other upstream 67370 37400292 ~ 37411180 (+) False LOC120571062
TU187560 other upstream 102843 37361943 ~ 37375707 (+) False G139141
TU187611 other upstream 362079 37067758 ~ 37116471 (+) True G139152
TU187538 other upstream 421828 37047001 ~ 37056722 (+) True G139139
TU187628 other downstream 19166 37511709 ~ 37523132 (+) False LOC120570989
TU188274 other downstream 375366 37867909 ~ 37873124 (+) True G139586
TU188180 other downstream 934207 38426750 ~ 38430454 (+) True G139581
TU188294 other downstream 1101032 38593575 ~ 38594662 (+) False G139594
TU188586 other downstream 1445711 38938254 ~ 38942817 (+) False LOC120571012

Expression Profile