RNA id: XM_039819752.1



Basic Information


Item Value
RNA id XM_039819752.1
length 2497
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120571051
representative True

Chromosome Information


Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 37375792 ~ 37378767 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCCTTCTACCcttccctgtgaagagtgaagatgatgaagaggaagGGCTTCATCGGAGACAAActgaacacatggaaacagaagctgatggagaggactgtggaggaccagaaccagccaggaactcacatccacttttacaaccagagactgatgATAGTGTTGATAGCGATTTCTGGAAGGAGAGCAGAAAACGTCCGACATGTTTGAACTCTCTGGAACATGAGGAAGTTCCTGTCAGTGCTGACAAAGAAAAAgattcaagatgtaagaaaacattcagctgctctgagtgtgggaaaagatttggcCGCAAGACACGCCTAAATAGACACATGAAAtgtcacacaggagaaaaacctttcagctgctcagtttgtaaaaaATCTTTTTCAGAGAATGGAagtttacagaaacacatgcgagtccacacaggagagaaaccattcacctgctcagtttgtaagagACATTTTGCATGGAAAGGACATTTTCAGAgtcacatgagaatccacactggagagaaaccTTACAGCTGCTCATTCTGTGATAAAGCTTTCCGTGAAAGTGGAAATCTTAAGAGACACATGGCcctccacacaggagagaaaaaataCGCCTGCAGTTTTTGTGACGAAAAATTCACCTGGCCTCAACAGCTCAAAACCCATCAGTGTGTTAGTCGACATCTGCAACCAGAGACTggagaccagactggagactcttctgaacctgagactgatgacagtgctgattggaaggagaccagagaacctcagtcagctttaaactctctgaaacatgaatCAAGATGTAAGAAaccattcagctgctctgagtgtgggaaaagatttggcACCAACGCACAtttgaagagacacatgataaCTCATACAGGTGAGAAagctttcagctgctctgattGTGGGAGAAGATTTGGCCGTAAGGCACATCTGCAAGAACACATGATGACTCACACAGGGGAGAAACCATTCAGCTGCTCAGATTGTGGGAAATCTTTTGTGTGGCGAGGACGTTTGTTGAAACACATGAGCATCCACACAGGCGAGATCCCTTTTGGCTGCTCATTTTGTGATAAAAGATGTTGGCACAAGTCGgatctgaagagacacatgatgactcacacgggagaaaaacctttcagctgctcagagTGTGGAAAAAGATTTATACAGAGGGCGCAGCTGACTCAACACGTTACGGTTCACACAGGGGAGAAAAATTACAGCTGCAGCGTTTGCGATAAAACATTTGCCTGGGCTTCGCAGATCAAAAGACACAAATGTGTCGGCCGTCAGTCGTCACAGCTTCGTCAAACTGAGGAGAACAGAGAGGCAGAGCCTCCGGCCAGCAGAGACCCTGAGAGCTGCAGCTCATAACACTTATCTGATAGCTCCTTGACTCCTAGGTCCttggctgaaccggaagttgttccgtccctcctcggtgagggccgtctcaaagctcttatttctgcccagAGGACCaaggagggatcatcgaggagctatacgcgaggatacagagagcagccttcctggaagccatgcagctgaaggagttgctaactccgcccaatcAGCTGACGTATTCATGTTggcgcttcagaggaaaggaggtCTCATCTCCttttgcctctctcctcccgcGATTTCCTCGCGTCTCTCCCATGCCTCCtcgtgggagggactaagacgcgaggaagggaggcaagtggaggactcgAGGAGGCAATATAAGGGACATAAGAAGCACcttatatccttgacgttccaagtccgggattgctccggtgccgcaggaaattccgccggatgcacgtcttttcggccggatgtccgtccccttcctcttcctttgtgttggcgttctaacctctggtggatttgtgaggactatggttaactgctcctcagatctctgcagggtaaatccagacagctagctagactatctgtccaatctgagttttctgttgcgcgACTACAACTACAAAGCAAGTTCAACATCCTCAGGATATCTTTGCATTGTCACGCTTCACTGaccctttttttcataaatttggtTCAACGGGatttatattgtattatgtGTTTTATTATGAGTTATTTAACATAAATCAACATCTAACTGTGAACTGATGTGTCTGAATCTTCCAGCGGCATTAAATAACACAGGGAATCCCTGCGGGGAAagagactggagactcttctgatcctgagactgatgacagtgctgattggaaggagaccagagaacctcagtcagctttaaactatGGAAATAAATCCATGTGTGAAGAAAGACTGGcagcagagagacacaaactgTCCACTGGTGTCACTAGCTGCTTTTGAGTGATATCTATTTAGGCCGTTTACACGTAcgtggttattttgaaaaacggagacatttcccttcgtttgtgcccttcgtttacacgcaaacggagaattcacctctgaaaacgagtctt

Function


GO: NA

KEGG:

id description
ko04139 Mitophagy - yeast

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU187800 lncRNA upstream 27398 37346709 ~ 37348394 (+) True G139303
XR_005641171.1 lncRNA upstream 54897 37309014 ~ 37320895 (+) True LOC120571081
TU187629 lncRNA upstream 67523 37306166 ~ 37308269 (+) True G139160
TU187631 lncRNA upstream 67523 37306166 ~ 37308269 (+) False G139160
TU187633 lncRNA upstream 69035 37306166 ~ 37306757 (+) False G139160
TU187805 lncRNA downstream 35581 37414348 ~ 37415199 (+) True G139308
TU187804 lncRNA downstream 67947 37446714 ~ 37449255 (+) True G139307
TU187542 lncRNA downstream 163472 37542239 ~ 37543053 (+) True G139140
TU187638 lncRNA downstream 174724 37553491 ~ 37554500 (+) True G139165
TU187829 lncRNA downstream 175984 37554751 ~ 37555441 (+) False G139326
XM_039819666.1 mRNA upstream 45332 37327579 ~ 37330460 (+) True LOC120570984
XM_039819665.1 mRNA upstream 95058 37279721 ~ 37280734 (+) True LOC120570982
XM_039819755.1 mRNA upstream 115364 37259271 ~ 37260428 (+) True LOC120571054
XM_039819764.1 mRNA upstream 150339 37207712 ~ 37225453 (+) True LOC120571061
XM_039819664.1 mRNA upstream 188614 37152032 ~ 37187178 (+) True LOC120570980
XM_039819668.1 mRNA downstream 6475 37385242 ~ 37400200 (+) True LOC120570985
XM_039819765.1 mRNA downstream 21525 37400292 ~ 37422427 (+) True LOC120571062
XM_039819766.1 mRNA downstream 21525 37400292 ~ 37411335 (+) False LOC120571062
XM_039819776.1 mRNA downstream 57489 37436256 ~ 37437358 (+) True LOC120571071
XM_039819669.1 mRNA downstream 79821 37458588 ~ 37476591 (+) True LOC120570987
TU187560 other upstream 85 37361943 ~ 37375707 (+) False G139141
TU187611 other upstream 259321 37067758 ~ 37116471 (+) True G139152
TU187538 other upstream 319070 37047001 ~ 37056722 (+) True G139139
TU187744 other upstream 386154 36987962 ~ 36989638 (+) False LOC120571069
TU186869 other upstream 843349 36529301 ~ 36532443 (+) False LOC120571613
XR_005641164.1 other downstream 21525 37400292 ~ 37411180 (+) False LOC120571062
TU187637 other downstream 64625 37443392 ~ 37446584 (+) True G139164
TU187628 other downstream 132942 37511709 ~ 37523132 (+) False LOC120570989
TU188274 other downstream 489142 37867909 ~ 37873124 (+) True G139586
TU188180 other downstream 1047983 38426750 ~ 38430454 (+) True G139581

Expression Profile