RNA id: XM_039819753.1


Basic Information

Item Value
RNA id XM_039819753.1
length 2597
RNA type mRNA
GC content 0.38
exon number 1
gene id LOC120571052
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 36758305 ~ 36760901 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

catggaaacagaagctgatggagaggactgtggaggaccagaaccagccaggaactcacatccacttttacaaccagagactgaagaccagactggagattCTTCTGAACCTGAAACTGATgccagtgctgattggaaggagaccagagaacctcagtcagctttaaactctctgaaacatgattcaagatgtaagaaaccattcagctgctctgagtgtgggaaaagatttgTCCTCAAGTCAAATCTGAAGACACATACGAGAGTCCACACAGAAGAGAAGCCTTTTAcctgctcagtttgtaataaATCCTTTACAGTGAGTGAACATTTACAGtcacacatgagaactcacacaggagaaaaacctttcagctgctcagtctgtaagaagtcttttacacagagaggaaaCTTATGgtcacacatgagaatccacacaagAGAGAagccttttagctgctctgagtgtggtaaGGCTTTCACTGTTAGTGTAACCTTGAagaaacacatgagaactcacacaggagaaaaacgttttagctgctctgagtgtgggagaagATTTGGCCTCAAGTCAAATCTGAAGCAACACATGCTAATTCATACAGgaaaaaaacctttcagctgctcaattTGTGATAACAAATTTGTCCTCAAGTCATCTTTGAAGACACACATgaaaactcacacaggagaaagaccttttagctgctctgatTGTCAGAAATATTTTGCACATGGTTCAAATTTACGAAAACAcctgagaatccacacaggagaaaaaccttttagctgctctgagtgtgataAAGCTTTCACTGTAAGTGGAAACCTGAAGAACCACATGCTGACTCATtctggagaaaaacctttcagctgctcagtctgtaagaaatcttttacacagagtggaTCTTTAAAGatacacatgagaatccacacaggagaaaaatcttttagctgcagtgtttgtaaaaaatcttttacacagagaggaaCTTTACGGTTACACATggcagtccacacaggagagaaaagattcagctgcagtgtttgtaacaaaagatttgcccAGCAGTGTAATCtcaaaaaacataaatgtgttggtccgatggaaacagaagctgatggagaggactgtggaggaccagaaccagccaggaactcacatccacttttacaaccagagactggagactcttctgaacctgataCTGATAACATGGAATAACATTTGTGCCTTAAAGTCCAAGTAAAACTTCtgaagtatcaaacaaaaatctcTGTATCAACATCTAGATAGAAGACATTATATTGTGTGGTAGAAAAATGTACTCTTATCttaaatattgtattatatattgttttgtcttgtaatgTCTGTCATATATCAATTATAATACAAAATATCAGACAAATGTAACCACCCAATATTTTATAGGGCCCACACATATATTCACTTCTTTCTAAGTAACGTATGTTTAGCAAGATTCACTATTAATCATGTATCAATATGGGAGTTTATTCAACATTTACATGAGCATACCAAAATTGCATGACAAAAACAGAAGACTGCTCTTATACTTGACTTATGGGGAAAATatgtacaaatacaaatatgtcAAATTTGTGCAAGCTGGGGTTTGCAGTGAACCCAAAGAAACCCAACCTCTCCcatctctttctgttctcttaaTCATCCTGCCATGGAATTAGCCATGGTCTGGTGGATTTTTGTGCAGAATTTTGCATCCCTGTGGAAATCAGAAAAGTATTGTTTTCATCTTCTAAAGCTGACAGATAGAAATgagacttaggtttacttattatatatttaagtactttaaaacgttaatatattgtaaaCTCCATGAatgagcctttctttgatgtcattgcCATTGTCATTGTTCCAAGAGAGAGCCAAGTAGGCCGACAGTCCTTACGTCTGGCTGGGACTGCGCTACACCTCACCTGCACTCTGGATTTCTGGTTCTGAGTCAGTGACGAGGTGGTCTGTTATAAGAACTGGGACTCACAAAAGATGGATGATGACTGTGACATGTCTGGAGCCATGGACAGAGGAGGACAACATAAGTGGTTCAAAAAGATTGACAATGAGGAGTTTAATTTCATCTGTTCTAAATAAAAACCCTCTACTCACTGGTAGCTGGCGTTTTAATTATTTACTCACTTTGTTTGCAGTGGTGTGACGTTGACACCATATCTGTCTGCTGGGTTTATTGAATGGCGTTCTGGGAAATATAGGAATCACAACCAAAGGGGAGGAGATATGAAATTACTAAGACTTTCTAACAGCAGATTTTAAATTGAGGGAAGATTACTAAGGATGTGATCCTGTAACAGGTTTTTCTGTCTCCTGATTCTGGTTCAGCTGAATGATCACTATTTGTTATTTCCTATAGTTATGTTTGTTTCTCTTAAAGTGTGAATCCTTTTTTTCAAGTTCTGGTGAATATTTGATGATTGTTATATCATGTAAAATCTGTGTATCCAACTTTGGGGGGATTTTTGGGAGTTTTATGTTGACAATTAATTGCTTTCTCTGAGGCTGAATAAACTGTTAAACTACA

Function

GO:

id name namespace
GO:0032991 protein-containing complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641182.1 lncRNA upstream 29226 36724886 ~ 36729079 (+) True LOC120571092
TU187666 lncRNA upstream 78503 36679133 ~ 36679802 (+) True G139189
TU187639 lncRNA upstream 94384 36661407 ~ 36663921 (+) True G139166
TU187644 lncRNA upstream 124918 36632785 ~ 36633387 (+) True G139171
TU187163 lncRNA upstream 160443 36596667 ~ 36597862 (+) True G138894
TU187690 lncRNA downstream 12283 36773184 ~ 36795537 (+) True G139210
TU187688 lncRNA downstream 32857 36793758 ~ 36850934 (+) False G139210
TU187661 lncRNA downstream 48308 36809209 ~ 36837240 (+) True G139185
TU187662 lncRNA downstream 73778 36834679 ~ 36837240 (+) False G139185
XR_005641169.1 lncRNA downstream 161834 36922735 ~ 36931556 (+) True LOC120571079
XM_039819771.1 mRNA upstream 27067 36729393 ~ 36731238 (+) True LOC120571067
XM_039819761.1 mRNA upstream 99121 36657374 ~ 36659184 (+) True LOC120571059
XM_039819658.1 mRNA upstream 152482 36558860 ~ 36605823 (+) True LOC120570975
XM_039820670.1 mRNA upstream 225770 36526529 ~ 36532535 (+) False LOC120571613
XM_039819759.1 mRNA downstream 201702 36962603 ~ 36984154 (+) True LOC120571057
XM_039819773.1 mRNA downstream 227052 36987953 ~ 36989697 (+) True LOC120571069
XM_039819762.1 mRNA downstream 243706 37004607 ~ 37006882 (+) True LOC120571060
XM_039819660.1 mRNA downstream 295893 37056794 ~ 37061670 (+) True LOC120570977
XM_039819661.1 mRNA downstream 313784 37074685 ~ 37096687 (+) True LOC120570978
TU186869 other upstream 225862 36529301 ~ 36532443 (+) False LOC120571613
TU186859 other upstream 241723 36512606 ~ 36516582 (+) True G138668
TU187150 other upstream 252371 36493103 ~ 36505934 (+) True G138883
TU186858 other upstream 409678 36338410 ~ 36348627 (+) False gabpb2a
TU186888 other upstream 511221 36229330 ~ 36247084 (+) True G138693
TU187744 other downstream 227061 36987962 ~ 36989638 (+) False LOC120571069
TU187538 other downstream 286100 37047001 ~ 37056722 (+) True G139139
TU187611 other downstream 306857 37067758 ~ 37116471 (+) True G139152
TU187560 other downstream 601042 37361943 ~ 37375707 (+) False G139141
XR_005641164.1 other downstream 639391 37400292 ~ 37411180 (+) False LOC120571062

Expression Profile