RNA id: XM_039819755.1


Basic Information

Item Value
RNA id XM_039819755.1
length 1158
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC120571054
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 37259271 ~ 37260428 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

catggaaacagaagctgatggagaggactgtggaggaccagaaccagccaggaactcacatccacttttacaaccagagactgaagaccagactgcaGACTCTTCAGAGACTGAAGTCAGTGATGGTGATTGGGAGGAGAGcactcagtcagctttaaactctctgaaacatgattcaagatgtaagaaaacattcagctgctctgagtgtgggaaaagatttggcCGCAAGTCACATCTGAAGccacacatgagaatccacacaggtgagaaacctttcagctgctcagtttgtaatacatcttttacacagagaggaagtttacagaaacacatgacAGTCCACACACGagagaaaacattcagctgcagtgtttgtaacaaaagatttgcctggTGTCTACAGCTCAAAAGACATACATGTGTCGGTCGTCAGTcatcacagcttcatcagagtcAAACTGAGGGGAACAGAGAGGCAGAGCctgaacctcagtcagctttaaactctctgaaacatgattcaaggcATGAGGAATcatttagctgctctgagtgtgggagaagATTTGGCCAAAAGGGAAATCTGAACAGACACATGatgactcacacaggagagaagccttttagctgctcagtctgtaatgAATCTTTTGCACAGAAAGGAGATGtacagagacacatgagaactcataCAGGAGAGACGCCtctcagctgctctgagtgtgggagaagATTTAAGGACAGGAGAAATCTGATGAGACACGtaagaactcacacaggagaaaaacctttcagctgcatGTTTTGTAAGAAGTCTTTCACACAGAGAGGAaatttacagacacacataataatccacaccggagagaagcctttcagctgctcagtctgtacgAAATCTTTTGCGCGGATCGGAGACTTACAAAGACACAGGAGAACTCACACAGGCGAGAGGCCGTTCAGCTGcacagtctgtaagaaatctttcaCACAGAGTGGAGATGTGCAGAGACACATGAGCATCCACaggaaagaaggaggaggaggacgaagaTGAAGACGAACTACACACAGCTTTACCAGCCGGGCTGCTGTCTGGATGcagctaacgattattttcattgtttattaaagggtaactttgttaTTTTTCAA

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187786 lncRNA upstream 5708 37253029 ~ 37253563 (+) True G139292
XR_005641172.1 lncRNA upstream 9650 37228845 ~ 37249621 (+) True LOC120571082
XR_005641184.1 lncRNA upstream 39338 37211896 ~ 37219933 (+) False LOC120571093
XR_005641183.1 lncRNA upstream 39338 37211982 ~ 37219933 (+) True LOC120571093
TU187777 lncRNA upstream 65852 37192864 ~ 37193419 (+) True G139286
TU187629 lncRNA downstream 45738 37306166 ~ 37308269 (+) True G139160
TU187631 lncRNA downstream 45738 37306166 ~ 37308269 (+) False G139160
TU187632 lncRNA downstream 45738 37306166 ~ 37383972 (+) False G139160
TU187633 lncRNA downstream 45738 37306166 ~ 37306757 (+) False G139160
XR_005641171.1 lncRNA downstream 48586 37309014 ~ 37320895 (+) True LOC120571081
XM_039819764.1 mRNA upstream 33818 37207712 ~ 37225453 (+) True LOC120571061
XM_039819664.1 mRNA upstream 72093 37152032 ~ 37187178 (+) True LOC120570980
XM_039819662.1 mRNA upstream 118193 37136857 ~ 37141078 (+) True LOC120570979
XM_039819661.1 mRNA upstream 162584 37074685 ~ 37096687 (+) True LOC120570978
XM_039819751.1 mRNA upstream 163402 37094426 ~ 37095869 (+) True LOC120571050
XM_039819665.1 mRNA downstream 19293 37279721 ~ 37280734 (+) True LOC120570982
XM_039819666.1 mRNA downstream 67151 37327579 ~ 37330460 (+) True LOC120570984
XM_039819752.1 mRNA downstream 115364 37375792 ~ 37378767 (+) True LOC120571051
XM_039819668.1 mRNA downstream 124814 37385242 ~ 37400200 (+) True LOC120570985
XM_039819765.1 mRNA downstream 139864 37400292 ~ 37422427 (+) True LOC120571062
TU187611 other upstream 142800 37067758 ~ 37116471 (+) True G139152
TU187538 other upstream 202549 37047001 ~ 37056722 (+) True G139139
TU187744 other upstream 269633 36987962 ~ 36989638 (+) False LOC120571069
TU186869 other upstream 726828 36529301 ~ 36532443 (+) False LOC120571613
TU186859 other upstream 742689 36512606 ~ 36516582 (+) True G138668
TU187560 other downstream 101515 37361943 ~ 37375707 (+) False G139141
XR_005641164.1 other downstream 139864 37400292 ~ 37411180 (+) False LOC120571062
TU187637 other downstream 182964 37443392 ~ 37446584 (+) True G139164
TU187628 other downstream 251281 37511709 ~ 37523132 (+) False LOC120570989
TU188274 other downstream 607481 37867909 ~ 37873124 (+) True G139586

Expression Profile