RNA id: XM_039819759.1


Basic Information

Item Value
RNA id XM_039819759.1
length 1597
RNA type mRNA
GC content 0.53
exon number 13
gene id LOC120571057
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 36962603 ~ 36984154 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTACGCGGCCAACAAGAACAGCGTGGCCTCCATCCACAAACTGCTGAGTTGTCCGTCCACTAATGTCTTCGAGAGAGGGGCTCTCGGCGAAACGGCGCTGCACGTCGCCGTCATGGCCGACAACCTGGAGGCCGCCGTGGCTCTGATGGACGCAGCTCCCGAACTCATCAACGAGCCGATGACCGCCGAGATCTTCCAAGGTGTCACTCCTCTCCACATCGCCGTGGTGACGCAGAACATCAGCCTGGTTCGTCATTTGATTGATCGCGGTGCTGACGTGGCTACACCGCGAGTCACCGGTCTGTTCTTCAGGAAGAGTTTACGAGGACTCATATACTACGGTGAGCACATCCTGTCTTTTGCTGCGTGTGTTGGGAACAAGGACATTATCTCCATGTTGATCGACGCAGGAGCCAGCACCAGGGTCCAGGATGAGCGTGGTAACACAGTGCTTCACATTTTGGTCCTGCAGCCCAACAGGACGATTGCATGTCAGGCTCTTGACCTGATTATGGCACGCGATGCCGAGCTGGACCAGCCGGTGCCAATCGATATGATGCCCAACAACCGAGGCCTTACAACTTTTAAACTAGCTGCCAAAAAGGGAAACACTGTGGTGTTTCAGCACCTGGTCAATAAAAGGCGTGTGGTCCAGTGGAATATGGGCCCCCTGACCTCCATGCTGTACGACCTGACGGAGATAGACTCATGGGCCGACAGCATGTCAGTGCTGGAGCTCATCGTGGTCTCTCCCCTGAGAGAGCCAAGAAGGATACTGGAGCTGACTCCTGTGAGGCAGCTGGTCAACCTGAAGTGGAACCTGTATGGAAAACATTACTTCAGGGTCCTGCTGTTTGTCTACCTCCTGTACATGTTGATCTTCACAATGTGTTGTGTATTTCGCCCTATTATGGACATTCCAGTGAGCAACAATACCCAAGACAAAACCGTCATGATCCAGAAACCACTTAATgAGAGTTACGTGACACATGCGGACCACTTGCGGCTGGTGGGGGAGATAATCAGCGTCCTGGGAGCTGTTGTCATCCTGTTGCTGGAGATCCCTGACATGCTGAGAGTGGgggcaaagcactattttggccAGACAGCACTGGGAGGCCCCTTCCACGTTATCTTCATCAGCTACGCATGCCTGGTGGTAATACTCTGTGTGTTCAGAGTCTGCTCGGTGCAGGCGGAGAAGGAGGTGATGGCGCTGTGTTTAGTTCTCTGCTGGACCAACGTCCTGTACTTCGCTCGAGGTTTCGAAATGCTCGGCCCCTATGTCATCATGATACAGAAGGTTATGTTTGGAGACCTGTTGAAGTTCATGTTTCTAATGTTCATTGTGGACATTGGGTTTCGGAAACTCTCTGTGGATGGTGTATATGACCCAGGCGTTTGGCACCCTTAATGAATATAGCCACTACTTCAGCACCCTCTGGGCCGAGTGGGAGATCAACTTGACCCTCGTAAACATGCCGGAGAACCCTACCTACATCACCCCCTTCATCGTCTACGTGGTGCAGGTCTCCTATACTATCTTCGCCTACATGTGTCTGTTGACTCTAATGAAAGCCATGCTGGTTGCAGCG

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG:

id description
K04974 TRPV5; transient receptor potential cation channel subfamily V member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641181.1 lncRNA upstream 20132 36938272 ~ 36942471 (+) True LOC120571091
XR_005641169.1 lncRNA upstream 31047 36922735 ~ 36931556 (+) True LOC120571079
TU187688 lncRNA upstream 111669 36793758 ~ 36850934 (+) False G139210
TU187661 lncRNA upstream 125363 36809209 ~ 36837240 (+) True G139185
TU187662 lncRNA upstream 125363 36834679 ~ 36837240 (+) False G139185
TU187747 lncRNA downstream 45166 37029320 ~ 37029792 (+) True G139257
TU187569 lncRNA downstream 133232 37117386 ~ 37187736 (+) True G139141
XR_005641178.1 lncRNA downstream 161820 37145974 ~ 37151893 (+) True LOC120571088
TU187777 lncRNA downstream 208710 37192864 ~ 37193419 (+) True G139286
XR_005641184.1 lncRNA downstream 227742 37211896 ~ 37219933 (+) False LOC120571093
XM_039819767.1 mRNA upstream 200668 36748017 ~ 36761935 (+) True LOC120571063
XM_039819753.1 mRNA upstream 201702 36758305 ~ 36760901 (+) True LOC120571052
XM_039819771.1 mRNA upstream 231365 36729393 ~ 36731238 (+) True LOC120571067
XM_039819761.1 mRNA upstream 303419 36657374 ~ 36659184 (+) True LOC120571059
XM_039819658.1 mRNA upstream 356780 36558860 ~ 36605823 (+) True LOC120570975
XM_039819773.1 mRNA downstream 3799 36987953 ~ 36989697 (+) True LOC120571069
XM_039819762.1 mRNA downstream 20453 37004607 ~ 37006882 (+) True LOC120571060
XM_039819660.1 mRNA downstream 72640 37056794 ~ 37061670 (+) True LOC120570977
XM_039819661.1 mRNA downstream 90531 37074685 ~ 37096687 (+) True LOC120570978
XM_039819751.1 mRNA downstream 110272 37094426 ~ 37095869 (+) True LOC120571050
TU186869 other upstream 430160 36529301 ~ 36532443 (+) False LOC120571613
TU186859 other upstream 446021 36512606 ~ 36516582 (+) True G138668
TU187150 other upstream 456669 36493103 ~ 36505934 (+) True G138883
TU186858 other upstream 613976 36338410 ~ 36348627 (+) False gabpb2a
TU186888 other upstream 715519 36229330 ~ 36247084 (+) True G138693
TU187744 other downstream 3808 36987962 ~ 36989638 (+) False LOC120571069
TU187538 other downstream 62847 37047001 ~ 37056722 (+) True G139139
TU187611 other downstream 83604 37067758 ~ 37116471 (+) True G139152
TU187560 other downstream 377789 37361943 ~ 37375707 (+) False G139141
XR_005641164.1 other downstream 416138 37400292 ~ 37411180 (+) False LOC120571062

Expression Profile