RNA id: XM_039819762.1


Basic Information

Item Value
RNA id XM_039819762.1
length 2276
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC120571060
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 37004607 ~ 37006882 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttcatcaaagacaaactcaacacatggaaaaagaagctgatggagaggactgtggaggaccagaaccagccaggaactcacatccacttttacaaccagaaaCTGAAGACAAGGCTTCAGACTCTTCAGAGACTGACGTCAGTGATGGTGATTGGGAGGAGagcagagaacctcagtcaacTTTAAACTATTTGAagaataaacaagtcactgttGGGGATATTAACTGTAAATCTGTTGGGGAAtccttcagctgctctgagtgtgacAAAGGATTTGGTACAAAGGGAAgtctgaagagacacatgatgactcacacaggagagagacctTTCatctgctctgagtgtgggaaaagTTTTACAGAAAGTGGAACATTACAGgcacacatgagaactcacacaggagagaagcctttcagctgctcagtctgtaagacaTCTTTTAGAGAGCGTGGAAATTTACGAGCACACATGAGaattcacacaggagagaaaccatttagctgctccgACTGTGGGAAAATATTTGGCCGCACATCACTTCTGAAGAGACACATGCAAACTCATACAGGAgtaaaacctttcagctgctcagtctgtaagaaatcttttacacagagggAAAACTTACAGATACATATGACTATCCACACAGGACAGAGGCCATTTAGCTGCACATTCTGTGAGAGAGGTTTCACAGCGAGAGGAAGTTTGgagaaacacatgagaatccacacaggggAGAGGCCGTTTACCTGCTCCGTCTGTAAGAAAAGTTTTAGAGATAGAGGAAGTTTAAATAGACACATGAGAGTCCACAACTGACAGGAACTAGCGTTTTCATTAGATGTTATACTCCGTTGTGTGggtccttaaaaagtcttacatttgaaTTTTAGGCCTGTTAAATTTTTGTTCTGtttagtttttcaaatgttgctTTATGTTGTCTGCCTTTAACAAAGTAACATTTGTTAACTGATCAATGGGTGGAAGTGTTGGCATTACGGGCCTAGCCCTCAAATGGTTTGAATCTTACTTGACAGTTTTACTGTCCATTGGTAATTGCTCTTCATCTGCTGCCCCTCTTTCTTGTGGGGTCCCCCAAGGTTCCATTTTGGGACCCAtgctcttttctctgtacatgCTGCCCTTGGggtccattaaaaaaaaaataacataacattttgttttaaagacAACGATGAGGACACACTTCAGCTTTTGCTTAACTACTTGAGAGATCTCAAAATATGGTTGGATCAGAATTTTCTCTGCCTCAATGCCAATAAGACTGAAATTGTTGTGTTCGGCGCTGAACATTTTAGTGCTTGTGTAGATGCTCTTGGTGCTTGAGAATCTGGGTGGGATTTTTGACAgtgcttttaaatttgacaaaccGATTTGTTCTGTTAAAACCAGTTTCTTCCAGCTGAGACTTTTGGCTAAGGTCAAGCCCTACCTGCTACACAAAGACTTCGAAAGagtcatacatgcatttattacgTCCTGTTTAGACTACTGTAACTCTTTGTATGTTGGATTGGATCAGTCATCCCTTCGTCGGTTATAGCTAGTCCAGcacgcagcagctcgacttttAACCGGGACCAAAAAGCGTGACCACATTACACCAGTTTTGGCCACGCTCCACTGGCTTCTTGTCCTTTtcaggattgattttaaaattgtattgcttgtttttaagatttttaatGGGTTGTCGCCTTCTTCTTTATCGGAGCTTTTACATGTCCACACACCTGTCAAAGCAGTCAGGTCTTCCAATCAGATGCTCCTCGATGTGCCCAGATCCAGGTTACAAAATAAAGGTGACCGAGCCTTTGCAGTGGCTGCTCCGAACCTCTGAAATAGTCTCCATATTCACATAAGAACAGCCCGGACCGCTGAAACATTCAAGTCCTTGCTGAAGACCCGCTACTATTCTTTAGCTTTCAATTCAAATTGAGCTTTGAcaacttgtcattttttttctactgttgattattttgtattgtgtattgtttgtgtatattatcattttggttgttttttttgtcactttggtcaactatgcttgtttttaaacgtgctatataaataaaattgaactgaactgatcCTTCATCTCTATATTAACATCTCTTATGACCTCTGtccagggactacagatgaagaTTAGCTTTTAGCTACATTTGGTACGATATAGGtgttgtgcattgtccctgcttgataaaaaataaaaagaataaccTACTGTATGTTTGTTAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641181.1 lncRNA upstream 62136 36938272 ~ 36942471 (+) True LOC120571091
XR_005641169.1 lncRNA upstream 73051 36922735 ~ 36931556 (+) True LOC120571079
TU187688 lncRNA upstream 153673 36793758 ~ 36850934 (+) False G139210
TU187747 lncRNA downstream 22438 37029320 ~ 37029792 (+) True G139257
TU187569 lncRNA downstream 110504 37117386 ~ 37187736 (+) True G139141
XR_005641178.1 lncRNA downstream 139092 37145974 ~ 37151893 (+) True LOC120571088
TU187777 lncRNA downstream 185982 37192864 ~ 37193419 (+) True G139286
XR_005641184.1 lncRNA downstream 205014 37211896 ~ 37219933 (+) False LOC120571093
XM_039819773.1 mRNA upstream 14910 36987953 ~ 36989697 (+) True LOC120571069
XM_039819759.1 mRNA upstream 20453 36962603 ~ 36984154 (+) True LOC120571057
XM_039819767.1 mRNA upstream 242672 36748017 ~ 36761935 (+) True LOC120571063
XM_039819753.1 mRNA upstream 243706 36758305 ~ 36760901 (+) True LOC120571052
XM_039819771.1 mRNA upstream 273369 36729393 ~ 36731238 (+) True LOC120571067
XM_039819660.1 mRNA downstream 49912 37056794 ~ 37061670 (+) True LOC120570977
XM_039819661.1 mRNA downstream 67803 37074685 ~ 37096687 (+) True LOC120570978
XM_039819751.1 mRNA downstream 87544 37094426 ~ 37095869 (+) True LOC120571050
XM_039819662.1 mRNA downstream 129975 37136857 ~ 37141078 (+) True LOC120570979
XM_039819664.1 mRNA downstream 145150 37152032 ~ 37187178 (+) True LOC120570980
TU187744 other upstream 14969 36987962 ~ 36989638 (+) False LOC120571069
TU186869 other upstream 472164 36529301 ~ 36532443 (+) False LOC120571613
TU186859 other upstream 488025 36512606 ~ 36516582 (+) True G138668
TU187150 other upstream 498673 36493103 ~ 36505934 (+) True G138883
TU186858 other upstream 655980 36338410 ~ 36348627 (+) False gabpb2a
TU187538 other downstream 40119 37047001 ~ 37056722 (+) True G139139
TU187611 other downstream 60876 37067758 ~ 37116471 (+) True G139152
TU187560 other downstream 355061 37361943 ~ 37375707 (+) False G139141
XR_005641164.1 other downstream 393410 37400292 ~ 37411180 (+) False LOC120571062
TU187637 other downstream 436510 37443392 ~ 37446584 (+) True G139164

Expression Profile