RNA id: XM_039819764.1


Basic Information

Item Value
RNA id XM_039819764.1
length 2529
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC120571061
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 37207712 ~ 37225453 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagtgctgattggaaggagaccagagaacctcagtcaactttaaactctctgaaacatgattcaagatttaagaaaacattcagctgctctgagtgtgggagaagATTTGACCGTGAGTCACATCTGAAgacacacatgagaatccacacaggagaaaaacctttcagctgctcagtttgtaagaaatcttttacacagagaggaagtttacataaacacatgagaatccacacaggagaaaagccttttagctgctcagtttgtaataCATCATTTACACAGAGTGGAGATTTACataaacacatgagaatccacacaggagagaagccttttagctgctcagtttgtaagaaatcttttacacagaaagGAGGTTTACGGTCACACAtgataactcacacaggagaaaagcctttcagctgctcagtctgtaagaaatattttacacagagaggaagtttacggtcacacatgacagtccacacaggagagaaaaaattcagctgcagtgtttgtaacaaaagattttccCGGCGTTCTCAtgtcaaaacacacatgataactcacacaggagagaagccttttagctgctctgtttgtaagaaatcttttacacagagtgaaaatttacggtcacacatgagaactcacacaggagagaagcctttcagctgctctgagtgtggtaaaGCTTTCGCTGAAGGTGGAAACCTGAAGAAACACATGatgactcacacaggagagaagccttttagctgctcagtttgtaagaaatcttttacacagagtggatatttacagagacacatgagaatccacacaggagaaaaacccttcagctgctcagtctgtaagaaatcttgTACAGAGAGTGGAAGTTTACGGTCACACATggcagtccacacaggagagaaaagattcagctgcagtgtttgtaacaaaagatttgcttgaaacagaagctgatggagaggactgtggaggaccagaaccaaccaggaactcacatcaacatccacttttacaacaagagactgaagaccagactggagactcttctgaacctgagactggtgactagggatgtcacgagaacCAATACTACCGATACCTTCCTGTTCTAAAATGACCCATTTTTTTGTAGCACCGTAGGCATCGTTAGCGCAATGCCAGTGTTAGCAGCATCGGTGCTGCACCTCTTCCGGTACTGATTGGGGCAGTATACGCTTCAGAGTTTTCCAGTCTATACATTCAGAAGTAGGAGGTCACGAACAAGtggccgaagtcacgcccttctacttccagtggaaaaaatatgaacgagagtcaacggagagatagattctacccgacctaaaaaacaGCATGTTCACTGCAATCTCactgtcctctcttcccgatttacagcccccctctcttggcttcaaataactcaccgttgtcggctacagctgctgaaacggctacacgttgtaaacagccctTGTCGCTTGCCTGCTCCTCTGGTAACGTTAgccgttagcagggttagcatggcgccGTTAGCCAGGACccgtcgggatcactttactggctgtgtctcaattgttgagtacacaaatgttgaaattacataaaatgcccgtcccttgtagccgtgataaattacatctccaatatttacctggggtttgtaacgtctctggtcgcgcaactgttagaaacactgttgttgtttttgcacagTAGCCTACCTTTGAAAAGATGCCTGGAAGTCTGGAATGTGTCTGGGGACACTAGTGGTTGCACTGTGgttacgttcagactgcaggcaaaagtggcccaaatccaaatcagattcaggccacttccatatgttgtcctgaatcagacccaggtctgattcttttcaatgcggccgcagtgttaacaaccaaggcggatttgatgcgacttttacctCAATAACCCTCgctgcgctctctctctccgcggGGAGGGGCGGGGGCCCCCTGCTCCCGGTGCGGCTGTCAATCGGGGCGGACTGTCCTCCGTGCATCCCAACCGCGTCGCGTCGCCAGGGCGGGAATCGGCTCACGTAAAAAGGCGATGTCGGCAACCCACCCGACCTGTCTTGAAACACAGACCACACGGACGCGTGCGAGTCAGAGGGTCGCCGCGTGGCGCAATGGAAGTGAGGGCCGGCGCGCCTGCTGAGGTGGGATCCCGGTCCTCGGGGTCAGGCGCATCACCGGCCCGTCTCGCCTGCACCGTTGGGGAGGTGGAGCGTGGGCGCATGTGATAGGACCTGAAAGATGGTGAACTATACCTGGGCAGGGCAAAGCCAGaggaaactctggtggatttgatgtagaaaggtgaaattgtgaaatgaatattatttatttatattattattaataaagcctTGCATTTATAAAGTCTTGGATTTCGTTACAGAGGTCTTATATTGTTTTGCCTTTCCTAGGATTAAGTTCATACCGTAACAAAATTAACTGTtactaattaattaaaaactgaCCGAGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187777 lncRNA upstream 14293 37192864 ~ 37193419 (+) True G139286
TU187569 lncRNA upstream 19976 37117386 ~ 37187736 (+) True G139141
XR_005641178.1 lncRNA upstream 55819 37145974 ~ 37151893 (+) True LOC120571088
TU187747 lncRNA upstream 177920 37029320 ~ 37029792 (+) True G139257
XR_005641181.1 lncRNA upstream 265241 36938272 ~ 36942471 (+) True LOC120571091
XR_005641172.1 lncRNA downstream 3392 37228845 ~ 37249621 (+) True LOC120571082
TU187786 lncRNA downstream 27576 37253029 ~ 37253563 (+) True G139292
TU187629 lncRNA downstream 80713 37306166 ~ 37308269 (+) True G139160
TU187631 lncRNA downstream 80713 37306166 ~ 37308269 (+) False G139160
TU187632 lncRNA downstream 80713 37306166 ~ 37383972 (+) False G139160
XM_039819664.1 mRNA upstream 20534 37152032 ~ 37187178 (+) True LOC120570980
XM_039819662.1 mRNA upstream 66634 37136857 ~ 37141078 (+) True LOC120570979
XM_039819661.1 mRNA upstream 111025 37074685 ~ 37096687 (+) True LOC120570978
XM_039819751.1 mRNA upstream 111843 37094426 ~ 37095869 (+) True LOC120571050
XM_039819660.1 mRNA upstream 146042 37056794 ~ 37061670 (+) True LOC120570977
XM_039819755.1 mRNA downstream 33818 37259271 ~ 37260428 (+) True LOC120571054
XM_039819665.1 mRNA downstream 54268 37279721 ~ 37280734 (+) True LOC120570982
XM_039819666.1 mRNA downstream 102126 37327579 ~ 37330460 (+) True LOC120570984
XM_039819752.1 mRNA downstream 150339 37375792 ~ 37378767 (+) True LOC120571051
XM_039819668.1 mRNA downstream 159789 37385242 ~ 37400200 (+) True LOC120570985
TU187611 other upstream 91241 37067758 ~ 37116471 (+) True G139152
TU187538 other upstream 150990 37047001 ~ 37056722 (+) True G139139
TU187744 other upstream 218074 36987962 ~ 36989638 (+) False LOC120571069
TU186869 other upstream 675269 36529301 ~ 36532443 (+) False LOC120571613
TU186859 other upstream 691130 36512606 ~ 36516582 (+) True G138668
TU187560 other downstream 136490 37361943 ~ 37375707 (+) False G139141
XR_005641164.1 other downstream 174839 37400292 ~ 37411180 (+) False LOC120571062
TU187637 other downstream 217939 37443392 ~ 37446584 (+) True G139164
TU187628 other downstream 286256 37511709 ~ 37523132 (+) False LOC120570989
TU188274 other downstream 642456 37867909 ~ 37873124 (+) True G139586

Expression Profile