RNA id: XM_039819771.1


Basic Information

Item Value
RNA id XM_039819771.1
length 1846
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC120571067
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 36729393 ~ 36731238 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gactcttctgaacctgagactgatgacagtgctgattggaaggagaccagagaacctcagtcagctttaaactctctgaaacatgattcagtATTTAAAAAGAATTTCAGCTGTTCTCAGTGTGGGAACAAATTTAGCACCAAGCCACacctgaagagacacatgagaatccacacaggagaaaaacctttcagctgctctgagtgtggtaaaTCTTTCTCTGATAGTGGAACCCTGAAGAAACACATGATGACTCACACAggtgaaaaacctttcagctgtttagattgtaagaaaacatttttaatgtctAGACATTTACAGTTGCACATGataatccacacaggagaaaaacctttcagctgctcagtctgtaagaaatcttttacacagagtggaAGTTTACGGatacacatgagaactcacacaggagagaagcctttcagctgctctgagtgtggtaaaGCTTTCACTCATAGTGGAGCCCTGAAGAaccacatgagaactcacacaggagaaaaacctttcagctgctcagtctgtaagaaatcttttacacagagtggaGATGTACGGTCACACATgaaaactcacacaggagagaagccttttagctgctcagtttgtaagaaatcttttacacggAGAGGAGGTTTACGATCACACATGGCCatagtccacacaggagagaaacctttcagctgctcagtctgtaagaaatattttacacagaGAGGACATTTACAGTCACACATggcagtccacacaggagagaaaagattcagctgcagtgtttgtaacaaaagatttgcctggCGTTATGATGTCAAAagacataaatgtgttggtctgatggaaacagaagctgatggagaggactgtggaggaccagaaccagccaggaactcacatccacatccacttttacaaccagagaatgaagaccagactggagactcttctgaacctgaaaCTGATAACATGGAATTAGGGCCAAAACGATTCCTCAAGTAACTCAAATAATTCAAATTACTTTGCAAAATGATTGGCCTCGAAGCTTTGGTTAATTAATGTTACCAACGTTTTATCGCTCATGGTGTTTCCGCTTGGaggattattactgtcgcacaacAGGCTGACGCTACTGGTGGCACTTGCCATGTAAATagtgagggaggggctaagagaagagacaggctggagaaaacgacagaaagtgcccaaagtttggaatcagttcaaacgtaattgaaacaaaaactctgtacagtgtctCTACTGCAAAAtggaactagcttaccacaataaaagcacgacgtcagtgcttcagcatctcaacagaaaacatctgAGTCTAACTTAAGCCTCTATTCCACGAAGGGGATCCgacaaaaataaatcagttGTATttgacgatgaaactacaccaaacacaacaactaccaaaaacaaagacaaggaaatacgtagtggtgaccacgatctgatctgaAGAGCCGACTTGTTGACTATCCCtttggaaaaacagctgattgttgcgcaccattttctctctctatctctctctctatctctctttcttcatggAGAAagagctgatcaacgatctactagcataagtgtaacagagctgtgtgacattgtaatcaaatatataaatgaaaataggttgagtataacttatatacatataggcctatatacagatcagtctcaggttgaaacttgtaatTCTGAAATTTAAGTTGCataacttaatgtaatgtttatgttgGCGCTGGGCAAcgattaaaagttttaatcgcatgatttccctgattaatcacgattaatcgccttgttatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641182.1 lncRNA upstream 314 36724886 ~ 36729079 (+) True LOC120571092
TU187666 lncRNA upstream 49591 36679133 ~ 36679802 (+) True G139189
TU187639 lncRNA upstream 65472 36661407 ~ 36663921 (+) True G139166
TU187644 lncRNA upstream 96006 36632785 ~ 36633387 (+) True G139171
TU187163 lncRNA upstream 131531 36596667 ~ 36597862 (+) True G138894
TU187690 lncRNA downstream 41946 36773184 ~ 36795537 (+) True G139210
TU187688 lncRNA downstream 62520 36793758 ~ 36850934 (+) False G139210
TU187661 lncRNA downstream 77971 36809209 ~ 36837240 (+) True G139185
TU187662 lncRNA downstream 103441 36834679 ~ 36837240 (+) False G139185
XR_005641169.1 lncRNA downstream 191497 36922735 ~ 36931556 (+) True LOC120571079
XM_039819761.1 mRNA upstream 70209 36657374 ~ 36659184 (+) True LOC120571059
XM_039819658.1 mRNA upstream 123570 36558860 ~ 36605823 (+) True LOC120570975
XM_039820670.1 mRNA upstream 196858 36526529 ~ 36532535 (+) False LOC120571613
XM_039820669.1 mRNA upstream 196858 36528840 ~ 36532535 (+) True LOC120571613
XM_039820667.1 mRNA upstream 357172 36362325 ~ 36372221 (+) True anp32e
XM_039819767.1 mRNA downstream 16779 36748017 ~ 36761935 (+) True LOC120571063
XM_039819753.1 mRNA downstream 27067 36758305 ~ 36760901 (+) True LOC120571052
XM_039819759.1 mRNA downstream 231365 36962603 ~ 36984154 (+) True LOC120571057
XM_039819773.1 mRNA downstream 256715 36987953 ~ 36989697 (+) True LOC120571069
XM_039819762.1 mRNA downstream 273369 37004607 ~ 37006882 (+) True LOC120571060
TU186869 other upstream 196950 36529301 ~ 36532443 (+) False LOC120571613
TU186859 other upstream 212811 36512606 ~ 36516582 (+) True G138668
TU187150 other upstream 223459 36493103 ~ 36505934 (+) True G138883
TU186858 other upstream 380766 36338410 ~ 36348627 (+) False gabpb2a
TU186888 other upstream 482309 36229330 ~ 36247084 (+) True G138693
TU187744 other downstream 256724 36987962 ~ 36989638 (+) False LOC120571069
TU187538 other downstream 315763 37047001 ~ 37056722 (+) True G139139
TU187611 other downstream 336520 37067758 ~ 37116471 (+) True G139152
TU187560 other downstream 630705 37361943 ~ 37375707 (+) False G139141
XR_005641164.1 other downstream 669054 37400292 ~ 37411180 (+) False LOC120571062

Expression Profile