RNA id: XM_039820322.1


Basic Information

Item Value
RNA id XM_039820322.1
length 2804
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC120571392
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 34642831 ~ 34649286 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCAGCAATGGGAGATTTGTCTTTGTACTACATACAGAGACTTATTGTCTTACTTCTGTGTCTCGTGCATCATCTGAACCCTTCCCTGGCTTATTCTCTGAAAAACTGCTCCATCTGTTATTCTAACGATGCCTCGGCTGATGTTGTTTTGCATTGCTCGGAACGTAACCTTGTAACTGTCCCTGATGACATACCCAGAGATGCAAGTGGAGTTTTTCTCTCGCACAATCAGCTCGAACAGATCAACAGGGACGATTTCAGGCATCTGTCAAAGCTCAGATTTCTGGCGCTGGAGGAAAATCTGATTGCTCACGTGGACGATGGATCTTTCATCCATTTGGTGGCGCTAACAAGTCTCTACATTAGAAATAACAAACTCACCAACCTGACAGGAAAACTATTTCAGGGACTGTCCAACCTTACCATGCTTGATCTCTCCAGTAACAACATTAATTCCATTCATACCTCGGCCTTTCAATCCCTGACCAGATTAGAAACCGTGATTTTAGACTCAAACAAGCTCCAACAAGTTGTTGACATTCAGCCCATCCTTCAGCTACCACTTATACAGAAACTTAATATTGGACGCAATCTATTTCCCTCCTTTCAGACCAAAGATCTGCTGCTGAATGAGCCATCAAGCCTGAAGGTGTTAGATTTTTCGAATGATGTGTTTGAAAAGTTCAGCATCACAACACAGATATTTCCTCACCTTGAGATGATAGACTTTTCTATGTCTGGCCATGTTGCCGGCTGGCAATGGGACATACCTGACAGGACTTTACTCAGGAACATAACTCAGCTGTATTTTAGTTTCCCGTACATTACTTTCGAAGGGATCCGAAAAGTCCTGCAGAGCCTCGACTCACTGATGCATCTGAGACTGAATTATGTGGAGAAGTGGATCCACAAAGGTCTCCTAGCTACGGTGTGCAAGATATTGACACTTAAGAAGCTGGATCTGTTTTTTAACAACGTCCCCGATATAAGTGCGAAACTTGTAGCTTGCTCTCAGCTCAGTGAGCTTGATTTGTCGTATACTTCCATGACTGAACTGTCTAAAGGCTCGATTCGACTGATGAAGCAACTAAGTTCGCTAACTTTAGAGAACAACCATCTCACCAAGGTGCCTGATGATATTCGGAGTCTCTCCTCTCTCGAGATCCTAAATATTGGTATTAATATTATCGCTGAGTTGAGCTGTGAGGATTTCACAAACACAACGCACCTCAGAGAGCTTTATCTGCACAACAACCACATTGCCAAACTGGAAAGATGTGTCTTTGAAAGTCTTAATGACCTGAAGGTTTTAGATATGAGCAATAACCTGCTCTGGACATTCGGAGACACCTTTAAAATAGGTCTGAAGAAGCTTGAGTTCTTGGATCTGAGCAACCACTTTGTACCTATTCTTGAAAAGGGGGATTTTCAAAGTTTAGGGTCCTTAAAATATTTGGATGTGGTGTCAAAACATATCAGGGGGGTGAAAGATAAGGCTTTTGATGGATTGAATAACCTAAGTAACCTAAGTGTATCTCTTCCACTtgaatttgaaaataaattcaaagGTTTACAGCAGATGGAAAATCTTACAACCTACTTCATTAATGACGGTTTCAAAGGTCCTCAACCAAAACATGATGAAGCTTTCTCTCCTTTAAAATCTATGAAAGTTCTCACAGTAAGAAACAGTCAGAGTTATCAAACTGGTTTTCCCTTTGACATACCAGCAGAAATGCTTCAGCCTATGAAACATTTAGAAGATTTCACAGCTGAGAATTTCTACATTTCTGCGCCAGATGTGGACACATTTAAATACAATCGCCAGCTCAAGAGTTTGACAATCAGACAGACTGATTTGTCAGACTTGGATCCTGGACTGTTTCAGCCAATGCCGCACTTGCAGGTTCTCGATTTCTCCGAAAGTAAGATCAAGTCTTTGGACTTTCTGTTCCAGGCCAATCTGTCTGCACTCAGATATTTGAAACTAAGTGACAATGAGATAACCGTGATCAATGAGATGGTCTTCCAATTTCTCCCCGCACTAACGTACCTCGATCTGAAAAACAACCCTTTCACTTGTGACTGCTCTAACGCTGGTTTTATCCAATGGGTGAAGAACAACGACCAAACTCAGGTTGTTAACGCCTACCAGTACACATGTTCCTTCCCTGTGGCTGAACAAGGAAACAAGCTTCTGGACTTTAACATCCAGTCCTGTTGGATGGATGTTAGCTTCCTCTGCTTCATTTCCAGCACTTGTTTGGTTGTTCTTACACTCATCACATCCTTCATCTACCACTTTCTGAGGTGGCAGCTAGCCTACGCCTACCACCTATTCTTGGCTTTCCTATATGACAGCAGTAAGAGAAAAGCGGGAACTCGACATCACTATGATGCCTTCATCTCCTACAATGTTAACGACGAGGCCTGGGTTTACCAAGAGATGCTTCCGGCACTGGAAGGAGAGCAAGGCTGGAGACTCTGTCTGCACCACAGAGACTTCCAGCCAGGGAAACCAATCGTAGAGAACATTACGGACGCCATATACGGCAGCAGGAAGACCATCTGTGTGATCACCCGGCGTTACCTGCAGAGCGAGTGGTGCTCCAGAGAGATCCAGATGGCCAGCTTCCGTCTGTTCGACGAACAGAAGGATGTGTTGGTCCTGCTGTTTCTGGAGGAGATCCCGGCCCACCAGCTGTCTCCGTACTACCGCGTGAGGAAGCTGGTGAAGAAACGCACCTACCTGAGCTGGCCCTAGGCTGGCCAACACACGGGAGTCTTCTGGCACAATGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186645 lncRNA upstream 180892 34461681 ~ 34461939 (+) True G138510
TU186600 lncRNA upstream 189068 34445122 ~ 34453763 (+) True G138477
TU186588 lncRNA upstream 333300 34308579 ~ 34309531 (+) True G138465
TU186577 lncRNA upstream 436099 34206319 ~ 34206732 (+) True G138456
TU186575 lncRNA upstream 439096 34202931 ~ 34203735 (+) True G138454
XR_005641226.1 lncRNA downstream 171119 34820405 ~ 34824367 (+) True LOC120571427
XR_005641227.1 lncRNA downstream 235009 34884295 ~ 34887973 (+) True LOC120571431
TU186745 lncRNA downstream 307597 34956883 ~ 35000229 (+) False G138586
TU186743 lncRNA downstream 332296 34981582 ~ 35006398 (+) True G138586
TU186758 lncRNA downstream 381728 35031014 ~ 35031789 (+) True G138599
XM_039820652.1 mRNA upstream 4537 34630044 ~ 34638294 (+) True LOC120571600
XM_039820877.1 mRNA upstream 34102 34602707 ~ 34608729 (+) True LOC120571789
XM_039820873.1 mRNA upstream 53717 34578457 ~ 34589114 (+) True LOC120571785
XM_039820876.1 mRNA upstream 69454 34540077 ~ 34573377 (+) False LOC120571788
XM_039820875.1 mRNA upstream 69454 34562075 ~ 34573377 (+) True LOC120571788
XM_039819641.1 mRNA downstream 25379 34674665 ~ 34683726 (+) True LOC120570955
XM_039820370.1 mRNA downstream 68829 34718115 ~ 34792462 (+) True LOC120571426
XM_039819642.1 mRNA downstream 160218 34809504 ~ 34815593 (+) True LOC120570956
XM_039820357.1 mRNA downstream 169579 34818865 ~ 34834462 (+) False LOC120571417
XM_039820356.1 mRNA downstream 169585 34818871 ~ 34834460 (+) True LOC120571417
TU186657 other upstream 69624 34564572 ~ 34573207 (+) False LOC120571788
TU186310 other upstream 644142 33969778 ~ 33998689 (+) True G138322
TU186960 other downstream 650006 35299292 ~ 35314797 (+) False mllt11
TU186964 other downstream 650006 35299292 ~ 35316864 (+) False mllt11
TU186965 other downstream 650006 35299292 ~ 35316864 (+) True mllt11
TU186967 other downstream 654485 35303771 ~ 35316864 (+) False mllt11
TU186968 other downstream 654485 35303771 ~ 35316864 (+) False mllt11

Expression Profile