RNA id: XM_039820332.1


Basic Information

Item Value
RNA id XM_039820332.1
length 2063
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC120571399
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 35457547 ~ 35459609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGTCTCACTTCTCAGGAAGTGAGACAcaagacagtcagacagtcgttgtcactgagcgagaggtgaaatggcgcagaaaggagttcagctggaccgggaaaccttctcttgttccatctgtctggatctactgaaggatccggtgactattccctgtggacacagctactgcatgaactgtattaaaggCTTCTGGGCTGAAGGGGATAAGAAGGAAATGTACAGCTGCCCTCAGTGCAGGCAGAGcttcacaccgaggcctgtACTGGTGAAAAACACAATGTTAGCAGGTTTAGTGGAAGaactgaagaagactggactccaagctgctcctggtgatcactgctatgctggagctgaagatgtggcctgtgatcTCTGCACCgggagaaaactcaaagcaCACAAGTCCTGTCTGCAATGTCTGGCTTCTTTCTGTGAGAAACACCTTCAGTTTCATTACAAATCAGAGAAAttcaagaaacacaagctggtggagccgtccaagaagctccaggagaacgtctgctctcgtcatgatgaggtaatgaagattttctgccgtactgatcagcagcttatctgttatctctgcttaatggacaaacataaaggccacgacacaatctcagctgcagcagaaaggactgagaggcagaaaaagctcgaggggagtcgacagaccatccagcagagaatccaggacagagagaaagatgtgaagctgcttcaacagcaggcggAGGCCATCGATCGCGCCGCcgataaagcagtggaggacagcgagaagatcttcaccgagctgatccgtctcctggagaaaagaagctctgatgtgaagcagcaggtcagatcccagcagaaaagtgaagtgagtcgagtcagagagcttcaggagaagctggagcaggagatcactgagctgaagagggaagacgctgagctgaagaagctctcacacacagaggatcacagccagtttctacacaactacccctcactgtcaacactcagccaatcagcatccagcatccatatcagtcctctgagctgctttgaggacgtgacagcggccgtgtcagaagtcagagataaactacaggacgtcctgagagagaagaggacaaAAGTCTCACTGACAGCGACTGAAGTGGACGTTTTACTGCcacaaccagagcccaagaccagagctggattcttaaaatattcaggtgaaatcacactggatccaaacacagaaaacaaatggctgttattatctgaggggaaTAGGAAAGCAACATTCATGAGTCAACATCAGtcttattctagtcacccagacagattcactgACTGGcctcaggtcctgagtagagagggtctgactggacgttgttactgggaggtggagaggagaggaggagtttatgtagcagtcgcatacaagaatatcagcagagcagggaTGACAGAGGAATGTTTATTTGGACaaaatgacaaatcttgggcGTTAAATTGTAACAACAACAGTTATACATTTTGGTCCAACAAAGTCCAAACTCCCGTCTCAGCTCCTGAGTCCTCCAGaataggagtgtacctggatcacagtgcaggtattctgtccttctacagcatctctgaaaccatgactctcctccacagagtccagaccacattcactcagcccctTTATGCTGGACTAAGGTTTTATGATTATGGAgactctgctgagttgtgtaaactgaaatagacagaagtcatttaagggttaaattctgtcattctgagtcattttttttgttaaaaaaaggaaaacttctctaaattgcagcttgttaaatgagaatattttctGGTTCCTTCACTCCTCGAGGCTTTTTTCTGCATTTcgatgcttttttatttttttgacccATTCAAGGCTTTTGTTGAtgctttttgatacattttcaatgtttttttatacgGTGGTTTTTATTGAAAGCTTTTTGATGCTTGCTTGCTACAACACACAtggactgacacacacacacacacacacacaaacacaaatgtggACACaccgcgtacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186855 lncRNA upstream 63519 35392086 ~ 35394028 (+) False G138666
TU186853 lncRNA upstream 82025 35372011 ~ 35375522 (+) False LOC120570961
TU186990 lncRNA upstream 101069 35347032 ~ 35356478 (+) False G138772
TU186923 lncRNA downstream 815 35460424 ~ 35467841 (+) True G138728
TU186910 lncRNA downstream 23801 35483410 ~ 35527783 (+) True G138715
TU187000 lncRNA downstream 28998 35488607 ~ 35490062 (+) True G138781
TU187002 lncRNA downstream 28998 35488607 ~ 35490341 (+) False G138781
TU187003 lncRNA downstream 28998 35488607 ~ 35490914 (+) False G138781
XM_039820347.1 mRNA upstream 13219 35378840 ~ 35444328 (+) True mindy1
XM_039820333.1 mRNA upstream 16522 35439347 ~ 35441025 (+) True LOC120571400
XM_039820331.1 mRNA upstream 35105 35403436 ~ 35422442 (+) True LOC120571398
XM_039819647.1 mRNA upstream 80341 35371967 ~ 35377206 (+) True LOC120570961
XM_039819646.1 mRNA upstream 115780 35341072 ~ 35341767 (+) True LOC120570960
XM_039819648.1 mRNA downstream 37268 35496877 ~ 35498492 (+) True LOC120570962
XM_039820368.1 mRNA downstream 55512 35515121 ~ 35515782 (+) True LOC120571424
XM_039819649.1 mRNA downstream 59366 35518975 ~ 35558552 (+) False LOC120570963
XM_039820382.1 mRNA downstream 343705 35803314 ~ 35803883 (+) False LOC120571439
XM_039819652.1 mRNA downstream 494246 35953855 ~ 35955159 (+) True LOC120570967
TU186837 other upstream 72084 35378839 ~ 35385463 (+) False mindy1
TU186852 other upstream 80509 35372011 ~ 35377038 (+) False LOC120570961
TU186965 other upstream 140683 35299292 ~ 35316864 (+) True mllt11
TU187041 other downstream 247291 35706900 ~ 35724402 (+) True G138806
TU186903 other downstream 343695 35803304 ~ 35818966 (+) True LOC120571439
TU186870 other downstream 605762 36065371 ~ 36257319 (+) True G138676
TU186931 other downstream 647108 36106717 ~ 36215827 (+) False LOC120571442
TU186906 other downstream 678538 36138147 ~ 36215671 (+) True G138711

Expression Profile