RNA id: XM_039820368.1


Basic Information

Item Value
RNA id XM_039820368.1
length 662
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC120571424
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 35515121 ~ 35515782 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAACAGCGTATCACATGCTGTTATTACATCAGAGCTCAGACTAGTTTCATTTCTCAGGAAGTGAGACAcaagacagtcagacagtcgtagtcactgagcgagaggtgaaatggcgcagaaaggAGTTGAGCTTGACCGGAGGAAGCCTTCTCTTTGTTCCATCTGTCTGcgatctactgaaggatccggtgactatTACCTGTCgacacagctactgcatgaactgtattaaaagccactggGATGAAGAGGATCGTAAGGACAGCTACAGCTGCCCTCAGTGCAGGCAGAGcttcacaccgaggcctgtACTGGTGAAAAACACCAAGTTagcagatttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcactggGAGAAAACTCAAAGCCATCAAGTCCTGTCTGCAATGTCTGGCTTCTTACTGTGAGAAACACCTTCAGCCTCATTACGATATAGCTAAgttaaagaaacacaagctggtggagccgtcccaagaagctccaggagaacgtctgctcGCGTGGCGATGAGGTAATGAAGATTTTCTGCcgtactgatcagcagcttatctgttatctctgcttaatggacaaacataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187003 lncRNA upstream 24207 35488607 ~ 35490914 (+) False G138781
TU187008 lncRNA upstream 24207 35489684 ~ 35490914 (+) False G138781
TU187002 lncRNA upstream 24780 35488607 ~ 35490341 (+) False G138781
TU187000 lncRNA upstream 25059 35488607 ~ 35490062 (+) True G138781
TU187005 lncRNA upstream 25722 35488607 ~ 35489399 (+) False G138781
TU186898 lncRNA downstream 3134 35518916 ~ 35614565 (+) True LOC120570963
TU186943 lncRNA downstream 34987 35550769 ~ 36011779 (+) True G138748
TU186914 lncRNA downstream 42931 35558713 ~ 35566787 (+) True G138719
TU186920 lncRNA downstream 100878 35616660 ~ 35704687 (+) True G138725
TU187025 lncRNA downstream 118655 35634437 ~ 35635272 (+) False G138795
XM_039819648.1 mRNA upstream 16629 35496877 ~ 35498492 (+) True LOC120570962
XM_039820329.1 mRNA upstream 47951 35447774 ~ 35467170 (+) False LOC120571395
XM_039820328.1 mRNA upstream 47953 35447774 ~ 35467168 (+) True LOC120571395
XM_039820332.1 mRNA upstream 55512 35457547 ~ 35459609 (+) True LOC120571399
XM_039820347.1 mRNA upstream 70793 35378840 ~ 35444328 (+) True mindy1
XM_039819649.1 mRNA downstream 3193 35518975 ~ 35558552 (+) False LOC120570963
XM_039820382.1 mRNA downstream 287532 35803314 ~ 35803883 (+) False LOC120571439
XM_039819652.1 mRNA downstream 438073 35953855 ~ 35955159 (+) True LOC120570967
XM_039820380.1 mRNA downstream 440635 35956417 ~ 35958468 (+) True LOC120571435
XM_039820386.1 mRNA downstream 464111 35979893 ~ 36004234 (+) True riok1
TU186887 other upstream 17503 35439291 ~ 35497618 (+) True G138692
TU186837 other upstream 129658 35378839 ~ 35385463 (+) False mindy1
TU186852 other upstream 138083 35372011 ~ 35377038 (+) False LOC120570961
TU186965 other upstream 198257 35299292 ~ 35316864 (+) True mllt11
TU187041 other downstream 191118 35706900 ~ 35724402 (+) True G138806
TU186903 other downstream 287522 35803304 ~ 35818966 (+) True LOC120571439
TU186870 other downstream 549589 36065371 ~ 36257319 (+) True G138676
TU186931 other downstream 590935 36106717 ~ 36215827 (+) False LOC120571442
TU186906 other downstream 622365 36138147 ~ 36215671 (+) True G138711

Expression Profile