RNA id: XM_039820672.1


Basic Information

Item Value
RNA id XM_039820672.1
length 1635
RNA type mRNA
GC content 0.60
exon number 2
gene id LOC120571616
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 34157845 ~ 34162056 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTCTTTTTCCCCCCGGACCTGAGCGGATTGTTTACTTTTCTTCTGAATGcgttaaacacacaaaaacttaATTTATTAGCATTTAATCGGGTCAGTTTCGGGGTTTTGACCGTTACAACGTGTATGTGTCAGTCTTTATCACGTTTACCGATATTAACCGGACGTTTTTGTGTGGTTTTTGGAGGATAAAACGCCTCATTTCCTTACcgagagagaggcagaaagtCAAGCGAACATGTCCGCGGAGCTGCGGATGTTCACCGCCGGAGCAGCGGAGGGGTTCGGCGGCGGACCCCGCAGCAGCCCGCCGCCAGAGATGGAGACCCTGCGGATGTACGTTAACGAGCGGCTGACGGCGGCGGTGGACGACATCCTGGGGCTGTTCGGGGAGACCGTGGCCCGGTACCGGGAGCAGATAGACCGTCAGCGGGGACAGCTGGACAAGCTGAGGTCCGAGGAGGACAAGTGGAGCCAGACAGACCCCGACCAGACGTCCTCCTGGGTCAAACTCTGCCCTGATGATCCGATCCGAAGCGTCCCGCTGGACCGGACGGACCAGACCCGTGAGACAGACGCCGTCTTCTCCGCCGCTCGGATCAAAACGGAAGTCTGCGGCGATGACCGCGGAGCTTCTGAGCCAACGAGCGACTTCGATCCAGAAAGAGCGAGCGACGGCCGACATCTCGCCGACTCATCCAACACGGAAGACAGCGGCGACTGGGGAGAGGCGCCGGGGCTTTGGAGACCGGAGGAGATGGACGAAGAAGCTCGGGGACAAAGTCCACCTCCGGGCGGAACGGCGCCGAGCTCAGCCGAGCCGCCACGCCCGTCCCAGCCGGCGTTTAGCTGCAAAGTTTGCGGCGAGTCCTTCAAGAGGATCGGCCGCCTGACCACGCACGCCTCGGAGCACCCGAGAGACTGCGGCCTGTGCGGGAAGCGCCTGGAGCCCGCCGAGAGCCTGGAGCTCCACCTGCGCGTCCACCGGGACGCGGCGTTCCACTGCGGCGTCTGCGGCCAGGGCTTCACGCTGCGCGGGAACCTGCGCACGCACCTGAGGATCCACACGGGCGAGCGGCCGTTCGGCTGCACCGTCTGCGGCAAGAGCTTCGGCCGCCGGGCGTCGCTGGTGCGCCACGTGCGCAGCCACACGGGCGAGAAGCCCTTCGTGTGCGCCTACTGCGGCCGCGGCTTCGTGGAGAAGGGGAACCTGACAGTGCACCTGCGCACGCACACCGGCGAGCGGCCGTACCGGTGCGCCATCTGCGACCGGCACTTCAGCCAGCGGTCGTGCTTCTACAAACACCCGTGTCAGAGGAAAGCCTGTCGGCGGCCTCCGTCGTCGCACGCCAAAAACACCGACGGCGATTAAAGGCCGCGGCTAACGGCTATTTTCAGCGTGGATTAACGTGCGGggtattttctggatgaatggatcgGTTGTTTGTAGGGGTTGCACGATATGGACAGAATGTGATATtttgcgatatcgatattaattttgatatttttaaacgtATGTAAAATTACAGAAGTTACGGGAAAACGCATCGAAATAGATTCctaacaaatacaacacaaaggttatttcaactgactgtcatattggacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186564 lncRNA upstream 7019 34150598 ~ 34150826 (+) True G138444
TU186425 lncRNA upstream 178666 33971018 ~ 33979179 (+) True G138375
XR_005641352.1 lncRNA upstream 192509 33961255 ~ 33965336 (+) True LOC120572089
XR_005641351.1 lncRNA upstream 233282 33922662 ~ 33924563 (+) True LOC120572088
TU186417 lncRNA upstream 244097 33909625 ~ 33913748 (+) False LOC120572044
TU186570 lncRNA downstream 2327 34164383 ~ 34165543 (+) True G138450
TU186568 lncRNA downstream 15273 34177329 ~ 34178546 (+) False LOC120571618
TU186571 lncRNA downstream 17222 34179278 ~ 34180008 (+) True G138451
TU186575 lncRNA downstream 40875 34202931 ~ 34203735 (+) True G138454
TU186577 lncRNA downstream 44263 34206319 ~ 34206732 (+) True G138456
XM_039819638.1 mRNA upstream 32853 34112095 ~ 34124992 (+) True LOC120570951
XM_039819637.1 mRNA upstream 47827 34026668 ~ 34110018 (+) True LOC120570950
XM_039821255.1 mRNA upstream 63600 34086043 ~ 34094245 (+) True LOC120572050
XM_039821257.1 mRNA upstream 108695 34041827 ~ 34049150 (+) True LOC120572052
XM_039821247.1 mRNA upstream 210882 33905913 ~ 33946963 (+) True LOC120572044
XM_039820673.1 mRNA downstream 1534 34163590 ~ 34178323 (+) True LOC120571618
XM_039820674.1 mRNA downstream 18746 34180802 ~ 34188425 (+) True LOC120571619
XM_039819640.1 mRNA downstream 251301 34413357 ~ 34428090 (+) True LOC120570953
XM_039820874.1 mRNA downstream 351781 34513837 ~ 34521390 (+) True LOC120571787
XM_039820878.1 mRNA downstream 362214 34524270 ~ 34536470 (+) True LOC120571790
TU186310 other upstream 159156 33969778 ~ 33998689 (+) True G138322
unassigned_transcript_658 other upstream 159245 33986779 ~ 33998600 (+) True LOC120570948
unassigned_transcript_656 other upstream 177895 33977509 ~ 33979950 (+) True LOC120570947
TU186299 other upstream 177979 33977556 ~ 33979866 (+) False G138322
unassigned_transcript_653 other upstream 185402 33755301 ~ 33972443 (+) True LOC120572047
TU186657 other downstream 402516 34564572 ~ 34573207 (+) False LOC120571788
TU186960 other downstream 1137236 35299292 ~ 35314797 (+) False mllt11
TU186964 other downstream 1137236 35299292 ~ 35316864 (+) False mllt11
TU186965 other downstream 1137236 35299292 ~ 35316864 (+) True mllt11
TU186967 other downstream 1141715 35303771 ~ 35316864 (+) False mllt11

Expression Profile