RNA id: XM_039820877.1


Basic Information

Item Value
RNA id XM_039820877.1
length 2870
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC120571789
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 34602707 ~ 34608729 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCAGCAATGGGAGGTTTGTCTTTGTACTACATACAGAGACTTATTGTCTTACTTCTGTGCCTCGTGCATCATCTGAACCCTTCCCTGGCTTATTCTCTGAAAAACTGCTCCATCTGTTATTCTAACGATGCCTCGGCTGATGTTGTTTTGCATTGCTCGGAACGTAAACTTGTAACTGTCCCTGATGACATACCCAGAGATGCAAGTATAGTGTATCTCTCGCACAATCAGCTCAAACAGATCAACAGGGACGATTTCCGGGATCTGTCAAAGCTCAGAGTTTTGTCACTCGACGAAAATCAGATTGCTCACGTGGACGATGGATCTTTCATCCATTTGGTGGCATTAACAAGGCTCCACATGGCCAATAACAAACTCACCGACCTGACAGGCAACCTCTTTCAGGGAATGTCCAATCTTACCATGCTTGATCTCTCCAGAAACAACATTACGTCCATTCATACCTCAGCATTTCAGTCCCTGTCCAGATTAGAAACCGTGATTTTAGACTCAAACAAGCTGCAACAAGTCGCTGACATTCAGCCCGTCCTAAAGCTACCACTTATACAGAAACTTAGTATTACAGGTAATCTATTTCCCTCCTTTGAGACCAAAGATCTGCTGCTGAATGAGCCATCAAGCCTGAAGGTGTTGGATTTTTCGAATAATGTGTTTGAAAAGTTCAGCATCACAACAAAGATCTTTCCTCACCTTGAGATGATAGACTTTTCTATGTCTGGCCAAGTTGCCGGCTGGAAGTGGGACATACTTGACAAGACTTTACTAAGGAACATAACTCAGCTGTATTTTAATTGCCCATACATTGCTTTCGAAGAGATCCGAAAAGTCCTGCAGAGCCTCGACTCACTGATGCATCTGAGACTGAATTATATGGACAAGTGGATCGACAAAGGCCTCCTAGCTACGGTTTGCGAGATACCGACACTTAAGAAGCTGGATCTGTATTGGAACAAAGTCCCCAATATAAGTGCAAAGCTTGTAACTTGCTCTCAGCTGAGTGAGCTTGATTTGTCATCTACTTCAATGACTGAACTGTCTAAAGGCTCGATTCGACTGATGAAGCAACTGATTTCCCTAACTTTAGTGAACAACCTTCTCACCAAGGTGCCCGATGACATTCGGAGTCTCTCCTCTCTCGAGATCCTAAATATTGGTATTAATACCATTTCTGAGTTGAGCTGTGGGGATTTCACAAACACAACGCGCCTCAGAGAGCTTTATTTGTACAACAACCACATTGCCAAACTGGACAGATGCATCTTTGAAAGTCTTAATGACCTGAAGGTTTTAGATATGAGTGACAACCTGATGTTGACATTTGGAGGCGCCTTCAAAATAGGCCTGAAGAAGCTTGAGTTCTTGGATCTAAGCAACAACTTAGTAGTTATTCTTGAAAAGGGGGATTTTCAGAGTTTAAGGTCCTTAAAATATTTGGATATGGTGTCAAAACATATCAGGAGGGTGAAACATAAGTCTTTTGATGGATTGAATAACCTGGGTAACCTAAGTGTATCTCTTCCACTTTGTTTCGAAAATAAATTCAGAGCTTTACAGCAGTTGGAAAATCTGACAATCTACTTTGATAGTGACATAATATGCAAGGGAGATCACAGTGGTTTTCCCTATGACATACCAATGGACATGCTGCAGGCTATGAGACATTTAGAGGAATTGACAGCTGAGAATTTCTACATTTCTGCGCCAGATGTGGACACTTTCAAATACAATCGCCAGCTCAAGAGTTTGACAATCAGACAGACTGATTTGTCAGACTTGGATCCTGGACTGTTTCAGCCAATGCCGCACCTGCAGGTTCTCGATTTCTCCGAAACTAAGATCAAGTCTTTGGATTTTCTGTTCCAGGCCAATCTGTCTGCAGTCAGATGTTTGAAACTAAGTGACAATGAGATTAACGTGATCAATGAGACAGTCTTCCAATTTCTCCCTGCACTAACATACCTCGATCTGAAAAACAACCCTTTCACTTGTGACTGCTCTAACGCTGGCTTTATCCAATGGGTGAAGAACAGCAACCAAACTCAGGTTGTTAATGCCTACCAGTACACATGTTCCTTCCCTGTGGCTGAACAAGGAAACAAGCTTCTGGACTTTAACATCCTGTCCTGTTGGATAGACATTAGCTTCCTCTGCTTCATTTCCAGCACTTGTCTGgttgttttattctttaattcattttttcttttttttttttttctccatttttttttttggtggcagCTAGCCTATGCCTACCGGCTCTTCCTGGCCTTCCTATATGACAGCAGGAAGAGAAAGGGAGGAACTCGTCATCTTTACGATGCCTTCATCTCCTATAATGTTGACGACGAGGCCTGGGTTTACCAAGAGATGCTTCCGGCACTGGAAGGAGAGCAGGGCTGGAGACTCTGTCTGCACCACAGAGACTTCCAGCCAGGGAAACCGATCGTAGAGAACATTACGGACGCCATATACGGCAGCAGGAAGACCATCTGTGTGATCACCCGGCGTTACCTGCAGAGCGAGTGGTGCTCCAGAGAGATCCAGATGGCCAGcTTCCGTCTGTTCGACGAACAGAAAGATGTGTTGGTCCTGCTGTTTCTGGAGGAGATCCCGGCCCACCAACTGTCTCCGTACTACCGCATGAGGAAGCTGGTGAAGAAACGCACCTACCTGAGCTGGCCCCAGGCCGGCCAACACATGGGAGTCTTCTGGCAGAATGTAGGGAGAGCTCTGGAGACGGGGGACGCTCCCACCGAGACCGCTGACCTGCTCACTGGACCGGCAGGATGCTGAAAAACATAATTTGGAAAAATGCtacaaaaaagttggaaaagggttaaggttag

Function

GO: NA

KEGG:

id description
K10160 TLR4, CD284; toll-like receptor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186645 lncRNA upstream 140768 34461681 ~ 34461939 (+) True G138510
TU186600 lncRNA upstream 148944 34445122 ~ 34453763 (+) True G138477
TU186588 lncRNA upstream 293176 34308579 ~ 34309531 (+) True G138465
TU186577 lncRNA upstream 395975 34206319 ~ 34206732 (+) True G138456
TU186575 lncRNA upstream 398972 34202931 ~ 34203735 (+) True G138454
XR_005641226.1 lncRNA downstream 211676 34820405 ~ 34824367 (+) True LOC120571427
XR_005641227.1 lncRNA downstream 275566 34884295 ~ 34887973 (+) True LOC120571431
TU186745 lncRNA downstream 348154 34956883 ~ 35000229 (+) False G138586
TU186743 lncRNA downstream 372853 34981582 ~ 35006398 (+) True G138586
TU186758 lncRNA downstream 422285 35031014 ~ 35031789 (+) True G138599
XM_039820873.1 mRNA upstream 13593 34578457 ~ 34589114 (+) True LOC120571785
XM_039820876.1 mRNA upstream 29330 34540077 ~ 34573377 (+) False LOC120571788
XM_039820875.1 mRNA upstream 29330 34562075 ~ 34573377 (+) True LOC120571788
XM_039820878.1 mRNA upstream 66237 34524270 ~ 34536470 (+) True LOC120571790
XM_039820874.1 mRNA upstream 81317 34513837 ~ 34521390 (+) True LOC120571787
XM_039820652.1 mRNA downstream 21315 34630044 ~ 34638294 (+) True LOC120571600
XM_039820322.1 mRNA downstream 34102 34642831 ~ 34649286 (+) True LOC120571392
XM_039819641.1 mRNA downstream 65936 34674665 ~ 34683726 (+) True LOC120570955
XM_039820370.1 mRNA downstream 109386 34718115 ~ 34792462 (+) True LOC120571426
XM_039819642.1 mRNA downstream 200775 34809504 ~ 34815593 (+) True LOC120570956
TU186657 other upstream 29500 34564572 ~ 34573207 (+) False LOC120571788
TU186310 other upstream 604018 33969778 ~ 33998689 (+) True G138322
TU186960 other downstream 690563 35299292 ~ 35314797 (+) False mllt11
TU186964 other downstream 690563 35299292 ~ 35316864 (+) False mllt11
TU186965 other downstream 690563 35299292 ~ 35316864 (+) True mllt11
TU186967 other downstream 695042 35303771 ~ 35316864 (+) False mllt11
TU186968 other downstream 695042 35303771 ~ 35316864 (+) False mllt11

Expression Profile