RNA id: XR_005641169.1


Basic Information

Item Value
RNA id XR_005641169.1
length 417
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC120571079
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 36922735 ~ 36931556 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgaaagtcggCTACTTCTCTTCCCGGAAGCTCTATAGTCTTCACTGTGGCTAACTGATAATATCTTCTAATCCATCCATCAGACGGCGGAGTAAAAGGCGCCAGTGTTTAGTTCCCTAAAAGAACGAAAGGTCCCAAACTGCTGGATGtggttttaaaagctgaaacGAAGCTACACAGAGCAGGTGGGCCAGCAGTGAGTGTGAAGAGAGACTTTTCTAAACTCTGACATGGACTCTGAGAACAGTCAGCACACACAGTCCTCTCACTGTTCCATCCACCAAGcTTTACCTCCAGACGTTAAGAAAGTGATTGTTGgtgaagaggagcagcaggagtgtagctccagtgtggaccagcaggagccagagccccccccacacattaaagcggagcaggaggaactgtggagcagtc

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187688 lncRNA upstream 71801 36793758 ~ 36850934 (+) False G139210
TU187661 lncRNA upstream 85495 36809209 ~ 36837240 (+) True G139185
TU187662 lncRNA upstream 85495 36834679 ~ 36837240 (+) False G139185
TU187664 lncRNA upstream 110520 36675176 ~ 36812215 (+) True G139187
TU187690 lncRNA upstream 127198 36773184 ~ 36795537 (+) True G139210
XR_005641181.1 lncRNA downstream 6716 36938272 ~ 36942471 (+) True LOC120571091
TU187747 lncRNA downstream 97764 37029320 ~ 37029792 (+) True G139257
TU187569 lncRNA downstream 185830 37117386 ~ 37187736 (+) True G139141
XR_005641178.1 lncRNA downstream 214418 37145974 ~ 37151893 (+) True LOC120571088
TU187777 lncRNA downstream 261308 37192864 ~ 37193419 (+) True G139286
XM_039819767.1 mRNA upstream 160800 36748017 ~ 36761935 (+) True LOC120571063
XM_039819753.1 mRNA upstream 161834 36758305 ~ 36760901 (+) True LOC120571052
XM_039819771.1 mRNA upstream 191497 36729393 ~ 36731238 (+) True LOC120571067
XM_039819761.1 mRNA upstream 263551 36657374 ~ 36659184 (+) True LOC120571059
XM_039819658.1 mRNA upstream 316912 36558860 ~ 36605823 (+) True LOC120570975
XM_039819759.1 mRNA downstream 31047 36962603 ~ 36984154 (+) True LOC120571057
XM_039819773.1 mRNA downstream 56397 36987953 ~ 36989697 (+) True LOC120571069
XM_039819762.1 mRNA downstream 73051 37004607 ~ 37006882 (+) True LOC120571060
XM_039819660.1 mRNA downstream 125238 37056794 ~ 37061670 (+) True LOC120570977
XM_039819661.1 mRNA downstream 143129 37074685 ~ 37096687 (+) True LOC120570978
TU186869 other upstream 390292 36529301 ~ 36532443 (+) False LOC120571613
TU186859 other upstream 406153 36512606 ~ 36516582 (+) True G138668
TU187150 other upstream 416801 36493103 ~ 36505934 (+) True G138883
TU186858 other upstream 574108 36338410 ~ 36348627 (+) False gabpb2a
TU186888 other upstream 675651 36229330 ~ 36247084 (+) True G138693
TU187744 other downstream 56406 36987962 ~ 36989638 (+) False LOC120571069
TU187538 other downstream 115445 37047001 ~ 37056722 (+) True G139139
TU187611 other downstream 136202 37067758 ~ 37116471 (+) True G139152
TU187560 other downstream 430387 37361943 ~ 37375707 (+) False G139141
XR_005641164.1 other downstream 468736 37400292 ~ 37411180 (+) False LOC120571062

Expression Profile