RNA id: XR_005641226.1



Basic Information


Item Value
RNA id XR_005641226.1
length 560
lncRNA type intronic
GC content 0.49
exon number 5
gene id LOC120571427
representative True

Chromosome Information


Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 34820405 ~ 34824367 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCGCACGCACGCGCCAATGAGGTGGTTATGTCGCAGACAAACAAGATGAATGAAACCTGCTTGGCCTCATCTGTCAAGGTAACCATTGACGGCAACACCGCAACTACGTCAATCGCCAACACCACCTCTGTGTTCCACTTCCTGCCGAGCTGCGACTGTCGTCGGTCATGAGCATCAACGCCACCGTCAGAGACCTCGACAAGTTCGCTACCATGTTGAAACTCAACGTGGATGTTTCGGGGGAAGAGGTCAACGTCCGTGCTCTTTATCTGTTAGgcAGAGAGGCGACCCTGAAGGACTCGGACCTGGAACGTTTCAAGCAGCAGGCAAGCTGCCTCGGCTTCTCCGGAGAGCCAGACTTCCTCTATGACCCCAAAAAAGGTTTCTGTGCTGAAGGTGAAGGCATAAAGTTGGAACTTTGAAGTTAACAACAACTTTGGTGAATATTTCAAACTGTAACTGAGAAAGTTATAGAGACAAAAGGTGACTCATCAAAAGTGGGGTCCGTATTTTGTATTCACGATCTAATAAAATGGTGTAGCACCAAGGTTttcaagctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186645 lncRNA upstream 358466 34461681 ~ 34461939 (+) True G138510
TU186600 lncRNA upstream 366642 34445122 ~ 34453763 (+) True G138477
TU186588 lncRNA upstream 510874 34308579 ~ 34309531 (+) True G138465
TU186577 lncRNA upstream 613673 34206319 ~ 34206732 (+) True G138456
TU186575 lncRNA upstream 616670 34202931 ~ 34203735 (+) True G138454
XR_005641227.1 lncRNA downstream 59928 34884295 ~ 34887973 (+) True LOC120571431
TU186745 lncRNA downstream 132516 34956883 ~ 35000229 (+) False G138586
TU186743 lncRNA downstream 157215 34981582 ~ 35006398 (+) True G138586
TU186758 lncRNA downstream 206647 35031014 ~ 35031789 (+) True G138599
TU186819 lncRNA downstream 304538 35128905 ~ 35129153 (+) True G138646
XM_039819642.1 mRNA upstream 4812 34809504 ~ 34815593 (+) True LOC120570956
XM_039820370.1 mRNA upstream 27943 34718115 ~ 34792462 (+) True LOC120571426
XM_039819641.1 mRNA upstream 136679 34674665 ~ 34683726 (+) True LOC120570955
XM_039820322.1 mRNA upstream 171119 34642831 ~ 34649286 (+) True LOC120571392
XM_039820652.1 mRNA upstream 182111 34630044 ~ 34638294 (+) True LOC120571600
XM_039820355.1 mRNA downstream 12903 34837270 ~ 34843241 (+) True LOC120571416
XM_039820327.1 mRNA downstream 21285 34845652 ~ 34866518 (+) True LOC120571394
XM_039820354.1 mRNA downstream 76235 34900602 ~ 34904608 (+) True LOC120571415
XM_039820345.1 mRNA downstream 83237 34907604 ~ 34921116 (+) True LOC120571407
XM_039819644.1 mRNA downstream 121357 34945724 ~ 34951476 (+) True LOC120570957
TU186657 other upstream 247198 34564572 ~ 34573207 (+) False LOC120571788
TU186310 other upstream 821716 33969778 ~ 33998689 (+) True G138322
unassigned_transcript_658 other upstream 821805 33986779 ~ 33998600 (+) True LOC120570948
unassigned_transcript_656 other upstream 840455 33977509 ~ 33979950 (+) True LOC120570947
TU186299 other upstream 840539 33977556 ~ 33979866 (+) False G138322
TU186960 other downstream 474925 35299292 ~ 35314797 (+) False mllt11
TU186964 other downstream 474925 35299292 ~ 35316864 (+) False mllt11
TU186965 other downstream 474925 35299292 ~ 35316864 (+) True mllt11
TU186967 other downstream 479404 35303771 ~ 35316864 (+) False mllt11
TU186968 other downstream 479404 35303771 ~ 35316864 (+) False mllt11

Expression Profile