RNA id: unassigned_transcript_658


Basic Information

Item Value
RNA id unassigned_transcript_658
length 759
RNA type C_gene_segment
GC content 0.57
exon number 4
gene id LOC120570948
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 33986779 ~ 33998600 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGGAGATCATGTGCAGGGgctggtgggcaacatatgGAGCGTGGACCCGAAAAAGGCCGCTCCCACGAAGGACGTGGTCGCGCCAGAAGAGGCCGAAGGCGGGACCGTGGGCAAAATGATGGACCCGACGAACCAGACCAGTGTTGGTACTCGCAAGGACAGTTGGgtttttgtacgacggCTCAGTCagtttgtatcactgtggtacACGTTCggtggaggaaccagactgGATGTTGGATGTGATGTGCGCCCGTACCTGACAGTGCTGCCCCCCTCCAGAGAAGACCTGGAGCAGGGGAAGGCCACGCTCATGTGCCTGGCCAACAAGGGCTTCCCCTCAGACTGGAGTCTGGCCTGGAAGGtggacggcagcagcagcagcagcagcagcagctgggaggagagcaggagcCCCGGGGTGCTGGGGAAGGACGGCCACTACAGCTGGAGCAGCACCCTGAGGCTCCCTGCAGACCAGTGGAGGAAGGTGGGCTCTGTGACCTGTGAGGCCACCCAGGGCTCCCAGACTCCGctctcagagacactgaggagagaCCAGTGTTCCCAGTCCTGAGCTGACTCCCTGGCAGGGACTCTGCTACTGGTTTTACTCTGACACTGCTCTCACTCTGCTCTCTGCAGCTAGCTCTGGCTTTTATTTCACCTGTTTCAATAGACATATTTACCAGCTTGTTGCAATGTTTCAATATTATTTCAGTGTTTCCAGATAATAAAGAGGTATTCATCAAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186425 lncRNA upstream 7600 33971018 ~ 33979179 (+) True G138375
XR_005641352.1 lncRNA upstream 21443 33961255 ~ 33965336 (+) True LOC120572089
XR_005641351.1 lncRNA upstream 62216 33922662 ~ 33924563 (+) True LOC120572088
TU186417 lncRNA upstream 73031 33909625 ~ 33913748 (+) False LOC120572044
TU186409 lncRNA upstream 75154 33884509 ~ 33911625 (+) True G138364
TU186564 lncRNA downstream 151998 34150598 ~ 34150826 (+) True G138444
TU186570 lncRNA downstream 165783 34164383 ~ 34165543 (+) True G138450
TU186568 lncRNA downstream 178729 34177329 ~ 34178546 (+) False LOC120571618
TU186571 lncRNA downstream 180678 34179278 ~ 34180008 (+) True G138451
TU186575 lncRNA downstream 204331 34202931 ~ 34203735 (+) True G138454
XM_039821247.1 mRNA upstream 39816 33905913 ~ 33946963 (+) True LOC120572044
XM_039821246.1 mRNA upstream 39817 33930886 ~ 33946962 (+) False LOC120572044
XM_039821248.1 mRNA upstream 73037 33890732 ~ 33913742 (+) False LOC120572044
XM_039821264.1 mRNA upstream 85257 33891128 ~ 33901522 (+) True LOC120572085
XM_039821244.1 mRNA upstream 98882 33876644 ~ 33887897 (+) True LOC120572043
XM_039819637.1 mRNA downstream 28068 34026668 ~ 34110018 (+) True LOC120570950
XM_039821257.1 mRNA downstream 43227 34041827 ~ 34049150 (+) True LOC120572052
XM_039821255.1 mRNA downstream 87443 34086043 ~ 34094245 (+) True LOC120572050
XM_039819638.1 mRNA downstream 113495 34112095 ~ 34124992 (+) True LOC120570951
XM_039820672.1 mRNA downstream 159245 34157845 ~ 34162056 (+) True LOC120571616
unassigned_transcript_656 other upstream 6829 33977509 ~ 33979950 (+) True LOC120570947
TU186307 other upstream 6913 33548249 ~ 33979866 (+) False G138322
TU186299 other upstream 6913 33977556 ~ 33979866 (+) False G138322
unassigned_transcript_653 other upstream 14336 33755301 ~ 33972443 (+) True LOC120572047
TU186295 other upstream 14355 33969778 ~ 33972424 (+) False G138322
TU186657 other downstream 565972 34564572 ~ 34573207 (+) False LOC120571788
TU186960 other downstream 1300692 35299292 ~ 35314797 (+) False mllt11
TU186964 other downstream 1300692 35299292 ~ 35316864 (+) False mllt11
TU186965 other downstream 1300692 35299292 ~ 35316864 (+) True mllt11
TU186967 other downstream 1305171 35303771 ~ 35316864 (+) False mllt11

Expression Profile