RNA id: TU189175


Basic Information

Item Value
RNA id TU189175
length 238
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G140254
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 309384 ~ 309621 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCTAAACACCtcagaacctcattatctaaagacatagctactctggatggtattgccctggcctccagcactactgtcagaaatttaggagttatttttgatcaggatatatcctttaatgccaatctaaaacaaacctcaagaacagccttttttcatcttcgtaacattgccaaaattaggaatatcctgtctcaaaacgacgctgaaaaactagtccatgcatttgttacgtcC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189170 lncRNA downstream 28521 280547 ~ 280863 (-) True G140249
TU189161 lncRNA downstream 90485 218502 ~ 218899 (-) True G140240
TU189159 lncRNA downstream 137716 171459 ~ 171668 (-) True G140238
TU189158 lncRNA downstream 138004 171174 ~ 171380 (-) True G140237
TU189157 lncRNA downstream 138381 170572 ~ 171003 (-) True G140236
TU189185 lncRNA upstream 27921 337542 ~ 337763 (-) True G140264
XR_005641430.1 lncRNA upstream 58717 368338 ~ 369120 (-) True LOC120572356
TU189189 lncRNA upstream 64216 373837 ~ 374216 (-) True G140268
TU189191 lncRNA upstream 110395 420016 ~ 420235 (-) True G140270
XR_005641692.1 lncRNA upstream 111306 420927 ~ 421529 (-) True LOC120573351
XM_039823396.1 mRNA downstream 171147 135443 ~ 138237 (-) True LOC120573587
XM_039823400.1 mRNA upstream 291013 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA upstream 291013 600634 ~ 606718 (-) True LOC120573590
XM_039823311.1 mRNA upstream 596924 906545 ~ 913680 (-) True LOC120573525
XM_039822700.1 mRNA upstream 708637 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA upstream 708637 1018258 ~ 1429717 (-) False sorcs2
unassigned_transcript_660 other upstream 69890 379511 ~ 379582 (-) True trnam-cau_27
unassigned_transcript_661 other upstream 70546 380167 ~ 380248 (-) True trnal-uag
unassigned_transcript_662 other upstream 72079 381700 ~ 381781 (-) True trnal-aag_3
unassigned_transcript_663 other upstream 73155 382776 ~ 382847 (-) True trnam-cau_28
unassigned_transcript_664 other upstream 73819 383440 ~ 383521 (-) True trnal-uag_1

Expression Profile