RNA id: TU189189


Basic Information

Item Value
RNA id TU189189
length 380
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G140268
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 373837 ~ 374216 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGTGAACTGTGAACTGTAGACGCTCCacattcatgctccatcttgagatacgttagccggtaagggacatacaggacatactgctccgccttttgcgttttctctgtcacatgataaactcacaggtgctgctaatgctgctaatgggtatcgtagcttcccggccccggcaagtttgaagaaggaaacatggaggaccacacgtattcaaaatccaaattttaggaacaggagtcttattcttcttcgcccagaaaaagaaaaaggagattgaaaagagcgaGAGAacagctttttgaagcgtgaaggctaacGTAGCTGTAATCCGTACGTTGAACTGTGTGGTGCGGgagagttgattgtgatatatgatgtcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641430.1 lncRNA downstream 4717 368338 ~ 369120 (-) True LOC120572356
TU189185 lncRNA downstream 36074 337542 ~ 337763 (-) True G140264
TU189175 lncRNA downstream 64216 309384 ~ 309621 (-) True G140254
TU189170 lncRNA downstream 92974 280547 ~ 280863 (-) True G140249
TU189161 lncRNA downstream 154938 218502 ~ 218899 (-) True G140240
TU189191 lncRNA upstream 45800 420016 ~ 420235 (-) True G140270
XR_005641692.1 lncRNA upstream 46711 420927 ~ 421529 (-) True LOC120573351
TU189196 lncRNA upstream 68440 442656 ~ 443015 (-) True G140275
TU189206 lncRNA upstream 125042 499258 ~ 499616 (-) True G140285
XR_005641418.1 lncRNA upstream 126024 500240 ~ 523058 (-) True LOC120572316
XM_039823396.1 mRNA downstream 235600 135443 ~ 138237 (-) True LOC120573587
XM_039823400.1 mRNA upstream 226418 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA upstream 226418 600634 ~ 606718 (-) True LOC120573590
XM_039823311.1 mRNA upstream 532329 906545 ~ 913680 (-) True LOC120573525
XM_039822700.1 mRNA upstream 644042 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA upstream 644042 1018258 ~ 1429717 (-) False sorcs2
unassigned_transcript_660 other upstream 5295 379511 ~ 379582 (-) True trnam-cau_27
unassigned_transcript_661 other upstream 5951 380167 ~ 380248 (-) True trnal-uag
unassigned_transcript_662 other upstream 7484 381700 ~ 381781 (-) True trnal-aag_3
unassigned_transcript_663 other upstream 8560 382776 ~ 382847 (-) True trnam-cau_28
unassigned_transcript_664 other upstream 9224 383440 ~ 383521 (-) True trnal-uag_1

Expression Profile