RNA id: TU189195


Basic Information

Item Value
RNA id TU189195
length 1605
RNA type TUCP
GC content 0.39
exon number 3
gene id G140274
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 443550 ~ 451670 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTGGCAGGTACAGCATTGTGCAGTCATGTGGCAGCTCTACTGTACCAGACGGCGCACTACTCCCAGCTAAGGCTTAGATCAGTTCCCCCAGTGTTCAGCTGCACAGAAACAGAACAAAAGTGGCACAAACCAAGAACCATGGGTATTAAACCTGGTCCAGTTAATGACATGGTCGTCATATCAGCCAGACCAAGAGAGAGGAGACTTGCAGAAGGAATCAGGTAGGGAGAGGcccataataaaaaacaactatTTCTTCCACTACGGCGTTTCTGTGCTATCTCTGAAATCAATCGGGGAAAACTGGagtttttctcactgtttgcaacacgttgagagaggaggaaaacgaGAAGTTTTTCCAAGGAGGAAAAACCAGAAGCTACATATTGGTATTGTAGCCTGCTGTTTAAAATCTTTTCAGAAGACAGCAGTGATACTGATCTCTTCTCTGACAACCACAGCACATTTGCAGAGCACATTCTCTGACAGTGAAAGCAGAATACACTTCACAATTGTAGAGGAcacaccacctctctctctctgaacacacacacactcactgcacaTTTTTTTGAGGAGCATCTGACATTCCTCTGTGACTCAGAATAGTgtgctctgacacacacacacacacggagcagATGGACAGAAAGGACTGCAACAGGTACCCTTCAAGAAGAACATggttttttttccatatttgtagtgtgtttattcttcattactgcatttacgattttctattgcatttatggtttttgcattttatgttTGAGAGAAAATTCCTCCCAACATTTGCATACACAAACACTCTAGGAACACTAGTGAAGAACATGGAGAGAAAGACGAGTGATGCATTCATTACTTTACGGTAATGATTAAAACTATGTCCACTCTTATGTTCCGATAATAGGCATTGGGATGTTTGGCATACGAATGCTACTCAATTGGGGCTAATTAGGGGTTTTGTACCTTATGTGGTTCCTCATGACCACACAAACTCAACTGATAGAATAttgataaaaaaagtaaattattaCTAAACaacaatattgttaatattgaaCAAAGTTAAGCATAAAGACCTAGgccatttttttgtgtgctttaGAACTTAGGAAAAGTTCCTTGTGgatcttttattacattgaAGTAATTTCACCTTCGACATTGCCGACACATAAACACCACATTTGACTTAGACTCTTGAAAGATTATctaatatatacattttctaatAAGGAATGACTTGGGTTTAGTTAGGAAATGTATGCATGATGTAGGTTATAATGATTTTTGTTCACTATTTCTTCGCTTACAGAAGTAAGCTATTTCCAGTGAAACCACACACATAGAATAACTGAATTTTATTTGTGCTCTGACAGCATTTAATGATGTTAGAGACAAGGAGGGGTCAGTCTTATTCTGATTCTTCTCAACTTTCACTCTGTGAGAGCTTTGATAATTGCACTGAGCGTGCTTcaattgatttatattaaaataaccaaTAGGAGGGAAGCCTTTGATGGCATTGGATAATTTAATTATCAGTTTTATGGAAAATTTGACTTCGCCTTATGGGTTTGCAGTACTTGGGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189196 lncRNA downstream 535 442656 ~ 443015 (-) True G140275
XR_005641692.1 lncRNA downstream 22021 420927 ~ 421529 (-) True LOC120573351
TU189191 lncRNA downstream 23315 420016 ~ 420235 (-) True G140270
TU189189 lncRNA downstream 69334 373837 ~ 374216 (-) True G140268
XR_005641430.1 lncRNA downstream 74430 368338 ~ 369120 (-) True LOC120572356
TU189206 lncRNA upstream 47588 499258 ~ 499616 (-) True G140285
XR_005641418.1 lncRNA upstream 48570 500240 ~ 523058 (-) True LOC120572316
TU189213 lncRNA upstream 104732 556402 ~ 556667 (-) True G140291
XR_005641701.1 lncRNA upstream 173543 625213 ~ 626442 (-) True LOC120573382
TU189229 lncRNA upstream 181057 632727 ~ 632947 (-) True G140307
XM_039823396.1 mRNA downstream 305313 135443 ~ 138237 (-) True LOC120573587
XM_039823400.1 mRNA upstream 148964 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA upstream 148964 600634 ~ 606718 (-) True LOC120573590
XM_039823311.1 mRNA upstream 454875 906545 ~ 913680 (-) True LOC120573525
XM_039822700.1 mRNA upstream 566588 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA upstream 566588 1018258 ~ 1429717 (-) False sorcs2
unassigned_transcript_680 other downstream 16066 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 24544 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 26469 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 27682 415797 ~ 415868 (-) True trnam-cau_40
unassigned_transcript_676 other downstream 30111 413368 ~ 413439 (-) True trnam-cau_39
TU189682 other upstream 1599811 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 3703254 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 3822981 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 3822981 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 3822981 4274651 ~ 4275274 (-) False G141027

Expression Profile