RNA id: TU189379


Basic Information

Item Value
RNA id TU189379
length 1511
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G140433
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1519888 ~ 1521398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAATAACTTAGTTGAACAGCTAATGGAAAGTTCAATTTTGCTACAACTATTAGCAGAATATATGTTATTAttacagaaaatgttttttttttccttttagcaAGAAGCTCAAGCTGTCAGCCTGGTGCTTAatctattcatttaaaaaaagttttaaagcaGGATAAAGTCCCAACATGAGCATTTTTGTCACTGGCCCTGGAATTCTTGGAAAAGATTAAACGTTTTGAGAGTATAGTCCCAATATAAGAAATGAAagctcctccacacagttgctagtagccaaggaggacacggaggattaaaaaaccatgacggactcttcagaagaagtCATTATCTTcagaaagtcgccggacgccccaatcttctgaacatagtcatactgagaaatccagagagagttgggtGGAGCTGATTGAATTCGATTTGATTCTGAAtaagctttgtagcaacttattaggcaatggcttgaatgtaacggatgttcattaatatcaaaaagttacacaccaAAGCTTTAACATGAATTTAACACATTCTATGTAGAAATTGGGGGAATATTCTACTGTAGATGAAAGTTGGAGGGTAGCTAAGGACAGCGgtaaacaaaagagaaaatgtgTTCAGCCAATGGAAAAAATAGTCGTTTCTAACTTCTGATTGGGTGGGCAGCctacagcccacctccacggtcGCCCACTGCCCCTCTTCGCATCCCGTTTAGGCACAAAGAGTTTGCAAGCAGCGGTCTGTTTCCTGGGTTAGGGTTGGAGTCCAATCCTAGACCTAACCAGATTAATCATGTTGCCCAGGGTTGCTTATGCCATGACAACTGTCTCTGTAGAAAATGAAGCAGAGCAGCGTGGCTTCAGTTGATCCTTTTCCTTTCCATATTAAGTCGTCTGATCATCAGCTGTCCACTCTGCAGCTAGAGTCCCAGCTAGggacaaacaaaacacagttaTAGAAATTTTAAGAGTGCAAATCTTCATTGTAATAGATGGATAgagtactttattaatcccaacaGGGCATatttgtgttgcagcagcaaacaagaagtaaaatacagaatataaactacaataaaaacagagaCTTGACTTAAATATGTGCTAAATATCCACACTGTGGTGCCCACTGTAGGACCAGACTCTGAATGGATACATGTATGGTACAGGCAGATATTATGTTGTCCTGTGTTGGTGACcaatcagaagaaaaaaaaaaagtgtgtgcgtACGTACATACGTTTCCTATcaaggcttttattgtgaaacattaGCACGGTTCCCATAATGGTGCATCAGATGCAGCTGCTGTCATCTTGTAGCACTGGTACGTCACTTCTGATTTACTAATAATTTATTCTTAGTTGGCACGCACATTCTTTATATCAAAGTTTATCAGACTTGTTTTCTGTTCTGTATCTGAAACTATGTTTATAcagtaaaataacagatttagAAGCAGCATCATGTTCAGAGAATTAAAATGCATTCTGACT

Function

GO:

id name namespace
GO:0035265 organ growth biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189363 lncRNA upstream 37216 1481804 ~ 1482672 (+) True G140419
TU189364 lncRNA upstream 37326 1481701 ~ 1482562 (+) False G140419
TU189324 lncRNA upstream 83144 1436494 ~ 1436744 (+) True G140392
TU189316 lncRNA upstream 120223 1349055 ~ 1399665 (+) True G140384
TU189307 lncRNA upstream 149860 1321305 ~ 1370028 (+) True G140376
TU189381 lncRNA downstream 2352 1523750 ~ 1524151 (+) True G140435
TU189417 lncRNA downstream 53191 1574589 ~ 1574860 (+) True G140463
TU189487 lncRNA downstream 209984 1731382 ~ 1788374 (+) False G140516
TU189495 lncRNA downstream 227449 1748847 ~ 1751285 (+) True G140518
TU189485 lncRNA downstream 265906 1787304 ~ 1788116 (+) False G140516
XM_039821371.1 mRNA upstream 323 1508801 ~ 1519565 (+) True trmt10a
XM_039822939.1 mRNA upstream 14234 1488484 ~ 1505654 (+) True ccdc96
XM_039823428.1 mRNA upstream 41447 1468364 ~ 1478441 (+) True grpel1
XM_039823310.1 mRNA upstream 629592 863318 ~ 890296 (+) True LOC120573524
XM_039823565.1 mRNA upstream 704679 812543 ~ 815209 (+) True LOC120573671
XM_039823464.1 mRNA downstream 1598 1522996 ~ 1543886 (+) False spata6l
XM_039823466.1 mRNA downstream 1599 1522997 ~ 1543886 (+) True spata6l
XM_039823465.1 mRNA downstream 3630 1525028 ~ 1543886 (+) False spata6l
XM_039823467.1 mRNA downstream 3733 1525131 ~ 1543886 (+) False spata6l
XM_039822693.1 mRNA downstream 61331 1582729 ~ 1620850 (+) True rap1gds1
TU189223 other upstream 897299 621116 ~ 622589 (+) False LOC120572292
TU189184 other upstream 1183712 335882 ~ 336176 (+) True G140263
TU189470 other downstream 196941 1718339 ~ 1725468 (+) False frem1a
TU189594 other downstream 500699 2022097 ~ 2030627 (+) False G140582
TU189616 other downstream 501194 2022592 ~ 2032225 (+) True G140594
TU189672 other downstream 534041 2055439 ~ 2059367 (+) True G140613
TU189860 other downstream 1306654 2828052 ~ 2903571 (+) False ablim2

Expression Profile