RNA id: TU189390


Basic Information

Item Value
RNA id TU189390
length 2334
lncRNA type sense_over
GC content 0.44
exon number 2
gene id tada2b
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1482789 ~ 1488426 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGGGGAAGGACGGCGAGTTCGCCGCCATCGAGAACCTGGCGGGCTTCGAGCTGCTGTCGGACCGGGAGAAGGTGCTGTGCAACTCGCTGAACCTGAGCCCGGCGCGCTACCTGACCGTCAAGACCATCATCATCAAAGACCACCTGCAGAAGAGGCAAGGCATCCCGGCCAAGAGCCGGCTGCCCAGCTACCTGGACAAGGTGCTCAAGAAGCGCATTCTCACCTTCCTCACGGAAAGCGGCTGGATATCCCGGGACGCCTCTTAGCCGTCCCGTCTAGGAAGTCAGAAGTCGATGATTGCTGATAGCTGATAGCTGATTTGCCATGCGCTCCGTAGGCAGGACAAAACTactggctgttttttttattttatttttctcaaaagtgATCTTGTGAATATGTACATTGCAAAGGAAGAGCTCCTTTTCcccactggaaaaaaaaattagtaTATTTTCATACCAGGGCTAGGAACAAAAATAAGCCTTTATTTTTACAATCGGAAAGGGACTAGTGGGTTCAAAGTACTTTGTGTCCATTTTGTTACTACAGTACATGACTGAGAACTACAGTGCTAACAAGTTCTACATAGTGGCAGAGATTTTTTCAGGTGCACTGACGATTTAAAATCCAAACATTGACGGGGCAGATTCATGCTGAAAAGAATAGGGGGGGGAATAAGATCGTACCATTACCTGGAACTGATGGGTGGCCGAAATGGtcacttttgttgttgttgttgttgtagatgTTTTTTTGGGATCTCTCAAACTCGCCCTACTTTGGTCCACTTTGTTAGCTGCTTCATCAGGTAAAGCTGGACTTTATAGAAAGAGCTATAGCTGATTTGGATTTTCGATCATTTTAAGGCCttcctgattttttttgttccttCGTACTGCCGAAAAAGAGAAGGGAAAAAGACAAAGCAGCAGGGTTGGGCCATCTTATGTTAGCTTATCACTGACGTATCAGCACTGGCACATATGTCAGCCAATAAGCAACAAGACATATaagtaaagaaatgccaaagaaTATTACAATATAATTTAGAGACAGTGTCGTCGTTACACggtctgtccaccagagggtgCTGCTGTTCAGCTGTAAAACCTCCCGCGTGCTACATGTCTCGGTCACAATTCTTATCATAGGATCCTTATCATAAATATTCATTTGTGTTtatggtataaaaaaaatatctgtatTTAAAGCCGCTGAATTATATCTTCTGACATATTCCTGCTGAATGAGCAACAATCCAGGTGAAAAGACATCTTTTaggtattatttattttgttatttttaacacCCAGCTAATCTGCTCCATCAGGACTGTTGGTCACTTTGATCAGATGTGATCCCCAGTAACCATTACTAACCCATTACTCATCAAAAAGCTGACTGAGAGAAGAACTTTTTGTGGCGTTTGAATATCTACATAtgcattggtttaaaaaaaatcctttatcggtctgGCTCGTATTAATATTTTAATCACCTTATTGTTTGTCACCTTAAATTAGTATGGGGGGAGAAACTCTCCGTTATTTCTTCAGTCTCTGTCGTTTCACGGCAGCAGCTCTGAAATCACAGAGAAGAAAGGCACGTGAAGGGGTCTTACCTAAGCTGAACTATATGCTAGATTCCGATCTTTTTACTGCAACCGTAACTGTTGGGAAATTGgccttGTcatatttcaaatgtttcttattgtcaacaaatgtcAACTTGTGTAGGTATATTTATTTGAAAAGATCTCCATACGTCCACACAGAGCTCTCTCTGGAGCGTGCAGGACGCAGGACGCCGACTGCGATCACGTTATCTCGTTTGTGATCTGGTTACGAACGACCCGAGTCTCGTACCGTTCCTTAAAAATTGTCCGATTTCGGCGTCAGTCCTTACCAACGTAAGTTCCCagatctcctctcctctccaggtTAGACATTTTGGTTGGCGCCGTTTTCTGCGTCCCCCTTGACGCTGTACTGCAGGgatgtcaaactcaacttccctaagggccacactagaaaatgagaatcccatcaagggccagacagaGTATACTGCTTTTGTGTCatgggaaaagtcaaatatctttgactgaattattgcatgtctcatatatgtcgaagaaaatgccaaaaacggttggaaaaagcgtcaaaaaaacgttgtgaaaaaaagtaggtgggccaaaatgtagaTAGCGGCCGGATCATAATTAacaaggggccagatttggcccgcgggccttgagtttgactcGTGTGCTGTACTGGGACAGCGCCGGCCGCGTGATTTAGAAACGTTCTCAACGCGTTCGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189389 lncRNA downstream 97 1481738 ~ 1482705 (-) True G140437
TU189384 lncRNA downstream 135 1481913 ~ 1482667 (-) False G140437
TU189362 lncRNA downstream 3989 1468232 ~ 1478813 (-) True G140418
TU189356 lncRNA downstream 19937 1461638 ~ 1462865 (-) True G140413
TU189346 lncRNA downstream 163227 1290908 ~ 1319575 (-) False G140404
TU189404 lncRNA upstream 34522 1519821 ~ 1521839 (-) True G140451
TU189407 lncRNA upstream 44936 1530235 ~ 1530950 (-) True G140454
TU189451 lncRNA upstream 137960 1623259 ~ 1639611 (-) True tspan5a
TU189455 lncRNA upstream 177722 1663021 ~ 1663252 (-) True G140492
TU189483 lncRNA upstream 234626 1719925 ~ 1725333 (-) True G140514
XM_039822700.1 mRNA downstream 53085 1018258 ~ 1429717 (-) False sorcs2
XM_039822938.1 mRNA upstream 6975 1492274 ~ 1500316 (-) True LOC120573289
XM_039823242.1 mRNA upstream 65229 1550528 ~ 1574124 (-) True slc1a1
XM_039823148.1 mRNA upstream 140592 1625891 ~ 1649432 (-) False tspan5a
XM_039823147.1 mRNA upstream 140592 1625891 ~ 1649432 (-) False tspan5a
XM_039823278.1 mRNA upstream 174838 1660137 ~ 1664945 (-) True LOC120573508
TU189195 other downstream 1031132 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1055318 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1063796 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1065721 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1066934 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 566182 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2669625 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2789352 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2789352 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2789352 4274651 ~ 4275274 (-) False G141027

Expression Profile