RNA id: XM_039822937.1


Basic Information

Item Value
RNA id XM_039822937.1
length 3778
RNA type mRNA
GC content 0.51
exon number 2
gene id tada2b
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1482789 ~ 1488426 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAGCAGGAGCCAGGCAACATGGCCGACCTGGGGAAGAAGTACTGCGTCTACTGCCTTACGGACGTCACGAACCTGCGGCTTCGCTGCACCGACTGCCCCGATATCGAGCTGTGTCCGGAGTGCTTCTCGGCGGGCGCGGAGATCGGTAATCACCGGAGATGGCACGGCTACCAGCAGGTCGACGGCGGTCGGTTCACTCTCTGGGGTCCCGACGCAGAGGGAGGATGGACCAGCAGGGAAGAGCAGTCGCTGCTCGATGCTATCGAGCAATATGGATTTGGAAACTGGGAGGACATGGCCGCTCACGTTGGAGCGTCCCGAACTCCCCAGGAAGTCATGGAACACTACGTCACCATGTACATCCACGGGAACCTGGGCAAGGCCTGCATCCCCGACAACATCCCCAACCGGGTGACGGACCACACCTGCCCGAGCGGGGGCCCCCTGTCGCCGAGCCTCACCACGCCGCTGCCCCCGCTGGACATCAGCCTGgcggagcagcagcagctgggctACATGCCCCTGCGGGACGACTACGAGATCGAATACGACCAGGACGCCGAGAAGCTCATCAGCGGGCTGTCGGTGAACTACGACGACGAGGACGTCGAAATCGAAATGAAGCGCGCCCACGTGGACATGTATGTGCGCAAGCTCCGAGAGCGCCAGCGGCGCAAGAACGTGGCCCGAGACTACAACCTGGTGCCCACGTTCCTGGGCCGAGACAAGAAGgacaaggagaaggagaagccGGGAGCGCTGGGAGTCACAGGCGCTGGCGGTGGCGCGggtggagcagcagcagcagccggcgGCGGCGGCACTGCTGGATCGGGTTCTACGACGGCAGCGGGATCAGGTCCTGTTCCCGCCACGCCCAAAAGAAAGATCACCaaggaggagaaggagcagCGGGTCAGACTGCGGGGGCTCTGCCAGTTCATGGCCACCCGGGAGTTTGAAGACTTGTTTGAGAACATGCACAAAGAGCGCGCGCTCCGGGCCAAGGTGCGTGAGCTGCAGCGCTACCGCCGCAACGGCATCGCGCGCCTGGAGGAGTCCGCCGAATACGAGGCAGCGCGCCACAAGCGGGAGAAACGCAAGGAGAACAAAAGCGTGGTCACCTCCAAACGGGgcagcggaggaggaggaggaggcgggcTCGGCTCAGGGATGGGGCTCGGGGTCGGAGGCGGGggcgggggcggggggggaggaggaggaggcgttGCCGGAGGACTCGGGGCTGGCGGCGGGATCAAAGAGGAGGGGAAGGACGGCGAGTTCGCCGCCATCGAGAACCTGGCGGGCTTCGAGCTGCTGTCGGACCGGGAGAAGGTGCTGTGCAACTCGCTGAACCTGAGCCCGGCGCGCTACCTGACCGTCAAGACCATCATCATCAAAGACCACCTGCAGAAGAGGCAAGGCATCCCGGCCAAGAGCCGGCTGCCCAGCTACCTGGACAAGGTGCTCAAGAAGCGCATTCTCACCTTCCTCACGGAAAGCGGCTGGATATCCCGGGACGCCTCTTAGCCGTCCCGTCTAGGAAGTCAGAAGTCGATGATTGCTGATAGCTGATAGCTGATTTGCCATGCGCTCCGTAGGCAGGACAAAACTactggctgttttttttattttatttttctcaaaagtgATCTTGTGAATATGTACATTGCAAAGGAAGAGCTCCTTTTCcccactggaaaaaaaaattagtaTATTTTCATACCAGGGCTAGGAACAAAAATAAGCCTTTATTTTTACAATCGGAAAGGGACTAGTGGGTTCAAAGTACTTTGTGTCCATTTTGTTACTACAGTACATGACTGAGAACTACAGTGCTAACAAGTTCTACATAGTGGCAGAGATTTTTTCAGGTGCACTGACGATTTAAAATCCAAACATTGACGGGGCAGATTCATGCTGAAAAGAATAGGGGGGGGAATAAGATCGTACCATTACCTGGAACTGATGGGTGGCCGAAATGGtcacttttgttgttgttgttgttgtagatgTTTTTTTGGGATCTCTCAAACTCGCCCTACTTTGGTCCACTTTGTTAGCTGCTTCATCAGGTAAAGCTGGACTTTATAGAAAGAGCTATAGCTGATTTGGATTTTCGATCATTTTAAGGCCttcctgattttttttgttccttCGTACTGCCGAAAAAGAGAAGGGAAAAAGACAAAGCAGCAGGGTTGGGCCATCTTATGTTAGCTTATCACTGACGTATCAGCACTGGCACATATGTCAGCCAATAAGCAACAAGACATATaagtaaagaaatgccaaagaaTATTACAATATAATTTAGAGACAGTGTCGTCGTTACACggtctgtccaccagagggtgCTGCTGTTCAGCTGTAAAACCTCCCGCGTGCTACATGTCTCGGTCACAATTCTTATCATAGGATCCTTATCATAAATATTCATTTGTGTTtatggtataaaaaaaatatctgtatTTAAAGCCGCTGAATTATATCTTCTGACATATTCCTGCTGAATGAGCAACAATCCAGGTGAAAAGACATCTTTTaggtattatttattttgttatttttaacacCCAGCTAATCTGCTCCATCAGGACTGTTGGTCACTTTGATCAGATGTGATCCCCAGTAACCATTACTAACCCATTACTCATCAAAAAGCTGACTGAGAGAAGAACTTTTTGTGGCGTTTGAATATCTACATAtgcattggtttaaaaaaaatcctttatcggtctgGCTCGTATTAATATTTTAATCACCTTATTGTTTGTCACCTTAAATTAGTATGGGGGGAGAAACTCTCCGTTATTTCTTCAGTCTCTGTCGTTTCACGGCAGCAGCTCTGAAATCACAGAGAAGAAAGGCACGTGAAGGGGTCTTACCTAAGCTGAACTATATGCTAGATTCCGATCTTTTTACTGCAACCGTAACTGTTGGGAAATTGgccttctttttttgggggtggaATGCAAGACACGAGTAGCATTCGTTCGGTAGCGGTCATTGCCTTAAAACTACAACTTTGTTTTGATGACCACATTTTTTGTGGTCATCCAAAAAAAGGAATGGCCTCCCCTTCATTGTATATCTTGAGAATTTAAAGCAGAACTCTGGTcatatttcaaatgtttcttattgtcaacaaatgtcAACTTGTGTAGGTATATTTATTTGAAAAGATCTCCATACGTCCACACAGAGCTCTCTCTGGAGCGTGCAGGACGCAGGACGCCGACTGCGATCACGTTATCTCGTTTGTGATCTGGTTACGAACGACCCGAGTCTCGTACCGTTCCTTAAAAATTGTCCGATTTCGGCGTCAGTCCTTACCAACGTAAGTTCCCagatctcctctcctctccaggtTAGACATTTTGGTTGGCGCCGTTTTCTGCGTCCCCCTTGACGCTGTACTGCAGGgatgtcaaactcaacttccctaagggccacactagaaaatgagaatcccatcaagggccagacagaGTATACTGCTTTTGTGTCatgggaaaagtcaaatatctttgactgaattattgcatgtctcatatatgtcgaagaaaatgccaaaaacggttggaaaaagcgtcaaaaaaacgttgtgaaaaaaagtaggtgggccaaaatgtagaTAGCGGCCGGATCATAATTAacaaggggccagatttggcccgcgggccttgagtttgactcGTGTGCTGTACTGGGACAGCGCCGGCCGCGTGATTTAGAAACGTTCTCAACGCGTTCGGCTgggtcaaatatat

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15127 TADA2B; transcriptional adapter 2-beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189389 lncRNA downstream 84 1481738 ~ 1482705 (-) True G140437
TU189384 lncRNA downstream 122 1481913 ~ 1482667 (-) False G140437
TU189362 lncRNA downstream 3976 1468232 ~ 1478813 (-) True G140418
TU189356 lncRNA downstream 19924 1461638 ~ 1462865 (-) True G140413
TU189346 lncRNA downstream 163214 1290908 ~ 1319575 (-) False G140404
TU189404 lncRNA upstream 31395 1519821 ~ 1521839 (-) True G140451
TU189407 lncRNA upstream 41809 1530235 ~ 1530950 (-) True G140454
TU189451 lncRNA upstream 134833 1623259 ~ 1639611 (-) True tspan5a
TU189455 lncRNA upstream 174595 1663021 ~ 1663252 (-) True G140492
TU189483 lncRNA upstream 231499 1719925 ~ 1725333 (-) True G140514
XM_039822700.1 mRNA downstream 53072 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA downstream 53072 1018258 ~ 1429717 (-) False sorcs2
XM_039822699.1 mRNA downstream 53072 1018258 ~ 1429717 (-) False sorcs2
XM_039822698.1 mRNA downstream 53072 1018258 ~ 1429717 (-) False sorcs2
XM_039822697.1 mRNA downstream 53072 1018258 ~ 1429717 (-) True sorcs2
XM_039822938.1 mRNA upstream 3848 1492274 ~ 1500316 (-) True LOC120573289
XM_039823242.1 mRNA upstream 62102 1550528 ~ 1574124 (-) True slc1a1
XM_039823148.1 mRNA upstream 137465 1625891 ~ 1649432 (-) False tspan5a
XM_039823147.1 mRNA upstream 137465 1625891 ~ 1649432 (-) False tspan5a
XM_039823278.1 mRNA upstream 171711 1660137 ~ 1664945 (-) True LOC120573508
TU189195 other downstream 1031119 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1055305 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1063783 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1065708 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1066921 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 563055 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2666498 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2786225 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2786225 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2786225 4274651 ~ 4275274 (-) False G141027

Expression Profile