RNA id: XM_039823147.1


Basic Information

Item Value
RNA id XM_039823147.1
length 1847
RNA type mRNA
GC content 0.48
exon number 11
gene id tspan5a
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1623259 ~ 1649432 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCATTGccgaccagcagcagcagcggtacCGCCTCCTGTAGGCGCAATTTGCCCACAACACAGAGGATCGTTTTTATTCTGCGGTTTACTGCGTTTAAGCCCGCTTTATATCTTCTATGCTACGTGTATGAGCGCGTCCTGAACTGCTTCCCCAGCATGGTCCCGACGTGGATCTGAAGCGGCTGGGAGAACATTAGAAGCGGACCAAGTGAAATGCATCCTCGGAGCGCTGAACCTGTTCCACCCCGCCGCACACAAAGCCTGTGAAGCAGGCCGTGTTTTTTCCCTCACGCAGACACCGCGCCGATGATGCTCAAACATGTCGGGGAATCATTACAAAGGCAACGAAGTCAGCTGCTGCATCAAATACTTCATTTTTGGGTTCAACATCCTGTTTTGGCTCCTGGGCATGGCCTTAGTTGGAATTGGACTGTGGGCATGGAGTGAGAAGGGAGTCCTGTCCAACATCTCGTCCATCACAGACCTGGGGGGCCTGGACCCAGTCTGGCTCTTCATGGTGGTCGGGGGGGTCATGTTCATTCTGGGCTTTGCAGGATGCATTGGTGCACTGCGAGAGAACACGTTTCTACTAAAGTTTTTCTCCGTGTTTCTGGGAATCATCTTTTTCTTGGAGCTGACAACGGGAATCCTGGCATTTGTCTTTAAGGACTGGATTAAAGACCAGCTCAACCTGTTCATCAACAATAACATCCGGGCGTACCGCGACGACATCGATCTACAGAACCTCATCGACTTCACTCAGGAATATTGGGAGTGCTGTGGTGCGTTTGGGGCAGACGACTGGAACCTGAACATCTATTTTAACTGTACTGATGGGAATCCCAGTCGGGAAAAGTGTGGAGTTCCCTTCTCCTGCTGCACCAAGGACCCAGCGGAGGATGTAATAAACACTCAGTGTGGATATGACATTCGAGCTAAACCAGACTCGGAGCAGAAGGACTACATCAACGTGAAGGGCTGCGTGCCGCAGTTTGAGAAGTGGCTGCAGGACAACCTCACCTTGGTGGCCGGGATCTTTATTGGAGTTGCACTACTGCAGATTTTTGGGATTTGTTTGGCCCAAAACTTAGTGAGTGACATCGAAGCTGTGCAGGCGAGCTGGgtgccccctcctctctccatgcGTCGCCTCCCACCACACTCCAGCAAGAAAGCATCGGCTTACTACTCatgagacacagaaacacatgcgctgtgtgtgtttgtagccgtttcttcacctGATGCTGAAGCAGCATTTCAATCCTAACAGCTCCGGGTCTTTGAATGCGCCTCCTTGAACACATCGTCAGCGGAGCGTTCAGAGGACCACGTCGATCACCGGCACCATTTTGTCCACTGAACCAGCACCTTCTTTTCAAGGCACTAATATGTGAAATGCCCTGTATATAACACTGTGTGACTTGTTGTTGCAGAGGATGGTTAAACATGCACTACATGCACGTTGTCACAATGCTCCGGTTTTTATAGCTACGTGTAGAGAGTAGGAGTTTTGATACATCTTTTTGATATTAGATCGGTATTTTTCACTGTGGAAATAACGCTCCATTGCTAAAACCCATCATATAGGACTGTGAAATAGTTGTGTACAAGAACTAAGGATTTGCTTCTTTTAAAGTGGAGTGCTTGCTTTATGTACCTTTCCACCATGTGTATCGGACTGTGCATACGGTGGCGCTAGAGATCAGCTGAATAGTCTCTTGATACTAACTCATCCAGCATGAAAGCGGAAATGACTACAAATTACTCCAATTATTTAGCATACTGAGTTACTAATGGACTAAGGGGTCAGCTAATTGtgatgttattaaaaaaaaaacagtta

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189407 lncRNA downstream 94941 1530235 ~ 1530950 (-) True G140454
TU189404 lncRNA downstream 104052 1519821 ~ 1521839 (-) True G140451
TU189390 lncRNA downstream 140592 1482802 ~ 1485299 (-) False tada2b
TU189389 lncRNA downstream 143186 1481738 ~ 1482705 (-) True G140437
TU189455 lncRNA upstream 13589 1663021 ~ 1663252 (-) True G140492
TU189483 lncRNA upstream 70493 1719925 ~ 1725333 (-) True G140514
XR_005641667.1 lncRNA upstream 126405 1775837 ~ 1779726 (-) False LOC120573239
TU189515 lncRNA upstream 126509 1775941 ~ 1782596 (-) True LOC120573239
TU189518 lncRNA upstream 137872 1787304 ~ 1788089 (-) False G140534
XM_039823242.1 mRNA downstream 51767 1550528 ~ 1574124 (-) True slc1a1
XM_039822938.1 mRNA downstream 125575 1492274 ~ 1500316 (-) True LOC120573289
XM_039822937.1 mRNA downstream 137465 1482789 ~ 1488426 (-) True tada2b
XM_039822698.1 mRNA downstream 196174 1018258 ~ 1429717 (-) False sorcs2
XM_039823278.1 mRNA upstream 10705 1660137 ~ 1664945 (-) True LOC120573508
XM_039823279.1 mRNA upstream 10705 1660137 ~ 1661012 (-) False LOC120573508
XM_039822828.1 mRNA upstream 100087 1749519 ~ 1774918 (-) False aco1
XM_039822829.1 mRNA upstream 100087 1749519 ~ 1774892 (-) True aco1
XM_039823219.1 mRNA upstream 234470 1883902 ~ 1885687 (-) True LOC120573473
TU189195 other downstream 1174221 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1198407 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1206885 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1208810 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1210023 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 402049 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2505492 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2625219 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2625219 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2625219 4274651 ~ 4275274 (-) False G141027

Expression Profile