RNA id: TU189556


Basic Information

Item Value
RNA id TU189556
length 603
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G140552
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1875358 ~ 1882805 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gataggttggatatttcagcctacatgtttcaaatgtattttatatcttgtatgtagTGTACCACAcaagaaggttagtctggggacaaccttcacccacaagaatgtgtaaatctattatgagtttgggtacaactttcacacagaggaattggagccaggaatgtgggaatctattaggagcatcggccataaaaggtgtagtttaagagtaaaacttgtgcactgaaatagatgtctcgtgctgtgtaagcacaaaaagagtttaaaaggtattcactatgatgtacatgtggttcatccttgggcagacgtgtctgtatgctcatggttgtcccagtgtcatgaaagtttgttcactgtttgaataaagctgcacttgatttgtaatcatcggactggtcgtcatctttGAGGTCTCCCTACATCATTTCTGAATCATCACCCGATATCAAAAACTATGACTCATTCATTTCTTATCATTTGGATAAGAATAGTTTCTGCATTAGTGATTGCCCAGAACTTGAGCAGGTTTTGTCTTCTTCAGACTTTTTTCAGAAAGCATGCGATTCAATTCGGTCACCATTCATGATAAAAGAGcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189545 lncRNA downstream 36229 1812520 ~ 1839129 (-) False G140548
TU189551 lncRNA downstream 36229 1817057 ~ 1839129 (-) True G140548
TU189559 lncRNA downstream 39933 1829812 ~ 1835425 (-) True G140553
TU189546 lncRNA downstream 51911 1817057 ~ 1823447 (-) False G140548
TU189548 lncRNA downstream 51911 1817057 ~ 1823447 (-) False G140548
TU189582 lncRNA upstream 10604 1893409 ~ 1893793 (-) True G140572
TU189619 lncRNA upstream 18222 1901027 ~ 1905267 (-) True G140597
TU189620 lncRNA upstream 18222 1901027 ~ 1905267 (-) False G140597
TU189656 lncRNA upstream 24440 1907245 ~ 1908644 (-) True G140601
TU189625 lncRNA upstream 44327 1927132 ~ 2030369 (-) True LOC120573528
XM_039822828.1 mRNA downstream 100440 1749519 ~ 1774918 (-) False aco1
XM_039822829.1 mRNA downstream 100466 1749519 ~ 1774892 (-) True aco1
XM_039823278.1 mRNA downstream 210413 1660137 ~ 1664945 (-) True LOC120573508
XM_039823279.1 mRNA downstream 214346 1660137 ~ 1661012 (-) False LOC120573508
XM_039823148.1 mRNA downstream 225926 1625891 ~ 1649432 (-) False tspan5a
XM_039823219.1 mRNA upstream 1097 1883902 ~ 1885687 (-) True LOC120573473
XM_039821465.1 mRNA upstream 136807 2019612 ~ 2022367 (-) True LOC120572242
XM_039823313.1 mRNA upstream 140214 2023019 ~ 2032506 (-) False LOC120573528
XM_039821762.1 mRNA upstream 571262 2454067 ~ 2573483 (-) False camk2d1
XM_039821757.1 mRNA upstream 571262 2454067 ~ 2573483 (-) True camk2d1
TU189195 other downstream 1423688 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1447874 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1456352 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1458277 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1459490 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 168676 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2272119 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2391846 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2391846 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2391846 4274651 ~ 4275274 (-) False G141027