RNA id: TU189744


Basic Information

Item Value
RNA id TU189744
length 249
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G140675
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 2094367 ~ 2195674 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctccccccgcgacccgacaccggataagcggacgaagatggatggatggatggatAGAAAGAAAATTAATgggaaaatcaataattaagacagaggatttaaagctactgggtacaggaaaaacaaagaatgttttaaGATATAGATAAAACAGTGATCTAGGGAaagaatgcaaaaacacacatgcaccaatAACCTCCTGATCAGTTCTAACCAAAGCCCgtgttctgagctttctctaaaaaCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641376.1 lncRNA downstream 8698 2082665 ~ 2085669 (-) True LOC120572143
TU189687 lncRNA downstream 35340 2056289 ~ 2059027 (-) True G140619
XR_005641417.1 lncRNA downstream 126717 1966607 ~ 1967650 (-) True LOC120572308
TU189658 lncRNA downstream 130535 1959644 ~ 1963832 (-) True G140603
XR_005641429.1 lncRNA downstream 152999 1938467 ~ 1941368 (-) True LOC120572355
XR_005641448.1 lncRNA upstream 79537 2275211 ~ 2275993 (-) True LOC120572445
TU189766 lncRNA upstream 79653 2275327 ~ 2275862 (-) False LOC120572445
XR_005641449.1 lncRNA upstream 80408 2276082 ~ 2276434 (-) True LOC120572446
TU189767 lncRNA upstream 83256 2278930 ~ 2279214 (-) True G140695
TU189768 lncRNA upstream 97955 2293629 ~ 2293835 (-) True G140696
XM_039823313.1 mRNA downstream 61861 2023019 ~ 2032506 (-) False LOC120573528
XM_039821465.1 mRNA downstream 72000 2019612 ~ 2022367 (-) True LOC120572242
XM_039823219.1 mRNA downstream 208680 1883902 ~ 1885687 (-) True LOC120573473
XM_039822828.1 mRNA downstream 319449 1749519 ~ 1774918 (-) False aco1
XM_039821762.1 mRNA upstream 258393 2454067 ~ 2573483 (-) False camk2d1
XM_039821757.1 mRNA upstream 258393 2454067 ~ 2573483 (-) True camk2d1
XM_039821763.1 mRNA upstream 258393 2454067 ~ 2573483 (-) False camk2d1
XM_039821760.1 mRNA upstream 258393 2454067 ~ 2573483 (-) False camk2d1
XM_039821759.1 mRNA upstream 258393 2454067 ~ 2573483 (-) False camk2d1
TU189682 other downstream 36176 2051481 ~ 2058191 (-) True G140615
TU189195 other downstream 1642697 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1666883 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1675361 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1677286 417010 ~ 417081 (-) True trnam-cau_41
TU190151 other upstream 1959250 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2078977 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2078977 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2078977 4274651 ~ 4275274 (-) False G141027
TU190197 other upstream 2078977 4274651 ~ 4275274 (-) False G141027

Expression Profile