RNA id: TU189819


Basic Information

Item Value
RNA id TU189819
length 281
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G140740
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 2710706 ~ 2725657 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTGATGCTTCGTCCATCTTGTTCACCAACTGACATACAcCTATGACTTTGTCCTTCTTGCCATTTCTGATGGGAGTGCAGAGCAAACTCTTTATCTGGTTGCTGGTGTGATCTGGGTTTTCCCTTGTCCAAGGGAACCGTTGGTCCTTGGTGACGTCTGCAATGTTGAGAGGCTGCATGGTGTTTTTAACATACTGGGCGTACATGTAGTTAATCTGACTGACATCACAGTCCCTTTTGGGGGCGTCTAGGACTTCCCCCAGCTCTTCATATTCCATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189817 lncRNA upstream 25551 2684519 ~ 2685155 (+) True G140738
TU189816 lncRNA upstream 31643 2673366 ~ 2679063 (+) True G140737
TU189808 lncRNA upstream 48186 2662272 ~ 2662520 (+) True G140729
TU189806 lncRNA upstream 66276 2643948 ~ 2644430 (+) True G140727
TU189797 lncRNA upstream 119411 2590928 ~ 2591295 (+) True G140718
TU189820 lncRNA downstream 4117 2729774 ~ 2730107 (+) True G140741
TU189825 lncRNA downstream 71595 2797252 ~ 2797522 (+) True G140746
TU189846 lncRNA downstream 99017 2824674 ~ 2825313 (+) False G140763
TU189848 lncRNA downstream 99017 2824674 ~ 2825386 (+) False G140763
TU189850 lncRNA downstream 99017 2824674 ~ 2825867 (+) True G140763
XM_039821445.1 mRNA upstream 41575 2664689 ~ 2669131 (+) True mad2l1
XM_039821747.1 mRNA upstream 260464 2355078 ~ 2450242 (+) False ank2b
XM_039821751.1 mRNA upstream 260467 2355063 ~ 2450239 (+) False ank2b
XM_039822856.1 mRNA downstream 83243 2808900 ~ 2824015 (+) True zcchc4
XM_039821737.1 mRNA downstream 132074 2857731 ~ 2954681 (+) True ablim2
XM_039822795.1 mRNA downstream 230691 2956348 ~ 3108934 (+) False afap1
XM_039822794.1 mRNA downstream 279515 3005172 ~ 3108934 (+) True afap1
XM_039822796.1 mRNA downstream 279517 3005174 ~ 3108934 (+) False afap1
TU189672 other upstream 651339 2055439 ~ 2059367 (+) True G140613
TU189616 other upstream 678481 2022592 ~ 2032225 (+) True G140594
TU189594 other upstream 680079 2022097 ~ 2030627 (+) False G140582
TU189470 other upstream 985238 1718339 ~ 1725468 (+) False frem1a
TU189223 other upstream 2088117 621116 ~ 622589 (+) False LOC120572292
TU189860 other downstream 102395 2828052 ~ 2903571 (+) False ablim2
TU189858 other downstream 132098 2857755 ~ 2903571 (+) False ablim2
TU189948 other downstream 530894 3256551 ~ 3304631 (+) False mllt3
TU190185 other downstream 1587502 4313159 ~ 4315538 (+) False zgc:112271
TU190186 other downstream 1587709 4313366 ~ 4315538 (+) False zgc:112271

Expression Profile