RNA id: TU189828


Basic Information

Item Value
RNA id TU189828
length 1494
lncRNA type intronic
GC content 0.45
exon number 1
gene id G140749
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 2688754 ~ 2690247 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAAACTACAGtgcatgaaataaaaacacaatattctatttaaaaaatgtatttaatttggTGCAAAATAATGGCAAAGGTCAAAGGTGCTCACTACTGCCCAAGCTGTTTTTGATAAGAAGAAAGCAGGTTTCGGGCCCTTTTGTTATTTGGCTGCGAACAACTTAGATGTCTCTTTCCAAACCAAAATAGAAAAGCGGATGATGAACACCAGACAGCTTCAAGAAAGATGGACATTGCAGCCAGAGTTTTCACTGAATACTCTGTGGTGCTTGACGAAAGCACGGACAAAACAAAAGTGTTCTCCACTGCATTATACACCAACAGACACTGTGCAGCAGATGCTTGAAATATGAATGTGTCTTGTCTATTGACCTGCAATGTGTCAATTAAATCCAGGGAACAGCAGCTGTGAGACAAACCTTTTTGGTTGTTTCTGTGTCCCTTTGATCAGACATTGGGATAACTAACATACCCATACTACTTTACTTTGCATGTAAACATCAGTGTCTTTTGGTTCGAGATTAGAATTCTCCAGTTGTGTCCTCTGACAATGTCTATAGTTTTCTGGAAGGTAAGACCTCAGCAGATCTCAGGGTGTTGGGAGTTAAAGGGGTCATAAAGTGGAACTCCTGTCCTTAGACTTTCAATACTCTCATCTTGAAGTCTTTAACAGACTTGCCATGGTCAAGTTCAGGATGAGTTCATGAGAACTCACAGAAAGTCATCAAGATACACAGCTACAGTGAAGAGATTCATGGAAGATTGGATGTTTCCGAGGCTACAGTTACACTGatatgttttggtttaaaaacaaatactgtatatcttttgtTACATTTCCCCCTAtcatcccccctgctctggcgttttccccctctcattcccagcctgggtaaaccctgaccaacttccggcaaatttgagatttgctctgcaagtcagtctggccaagagcccattcaagcccatttccaatgtttccaaatcgaggcaccaatcacaaccgttgaggcgggctttacacggtgacaatagcgcagcgacggcgagcagctttttgtttacattcaacatgacggccaccgaagcgcagcaacccgttgatgccgctgtcgctgctacgtcacccggatcgttggtctgattggttgaaggactatccaattgggCCCAGAGGCGTTTGAGCGGCGTCTGTtagtgacgcccctttggagatgagctgtgaatgaaccttgcccagacccactctcagttacaactgagaagggtctggtgtcaaccaggctatctcattccccctgctctagcgTTTCCatgcccctaaaccggagacatttggaaacacttctgacccgttgtggtttggaatctgcggggttgtgttgcagtctcaacagcctcaaacggagacctttggcaacacgaACACTGCCAATGCTCCGCCTGATCATGACGTCTCTTTCTCTGAGACAAAGCTACcaatgttaccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189826 lncRNA downstream 11835 2673523 ~ 2676919 (-) True G140747
TU189801 lncRNA downstream 89521 2597834 ~ 2599233 (-) False arsj
TU189780 lncRNA downstream 230575 2454066 ~ 2458179 (-) False camk2d1
TU189788 lncRNA downstream 244158 2427912 ~ 2444596 (-) False G140710
TU189789 lncRNA downstream 244158 2442768 ~ 2444596 (-) True G140710
TU189829 lncRNA upstream 70 2690317 ~ 2691045 (-) True G140750
TU189832 lncRNA upstream 39034 2729281 ~ 2729619 (-) True G140753
TU189844 lncRNA upstream 132623 2822870 ~ 2824231 (-) True G140761
TU189845 lncRNA upstream 134066 2824313 ~ 2824618 (-) True G140762
XR_005641447.1 lncRNA upstream 218383 2908630 ~ 2910625 (-) True LOC120572441
XM_039821280.1 mRNA downstream 66654 2598346 ~ 2622100 (-) True arsj
XM_039821758.1 mRNA downstream 115271 2454067 ~ 2573483 (-) False camk2d1
XM_039822857.1 mRNA upstream 122308 2812555 ~ 2818659 (-) True si:dkey-219e21.4
XM_039823055.1 mRNA upstream 426987 3117234 ~ 3128616 (-) True c14h4orf54
XM_039823321.1 mRNA upstream 448874 3139121 ~ 3143189 (-) True LOC120573530
XM_039823056.1 mRNA upstream 476621 3166868 ~ 3252975 (-) True focad
XM_039823625.1 mRNA upstream 765273 3455520 ~ 3457848 (-) True LOC120573709
TU189682 other downstream 630563 2051481 ~ 2058191 (-) True G140615
TU189195 other downstream 2237084 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 2261270 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 2269748 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 2271673 417010 ~ 417081 (-) True trnam-cau_41
TU190151 other upstream 1464677 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 1584404 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 1584404 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 1584404 4274651 ~ 4275274 (-) False G141027
TU190197 other upstream 1584404 4274651 ~ 4275274 (-) False G141027

Expression Profile