RNA id: TU189966


Basic Information

Item Value
RNA id TU189966
length 438
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G140842
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 3152899 ~ 3153336 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGGTTCTAAAGAGCCAAGTGTATGTATCCAAAAGGCTTCCCTGCATAGGAGTTTATTGATAATATCACCACCCCTGGGTGGGGGTGTGATTTTCTCAATTCCCCAGAACCTCAGTGATGCAGGGGAGCCATGATTAGCCTGCTTGTAATGCCTCGCCATGGCATAAGTTATGTTCTGGGTCCGAATAGCTGTCTTGTGTTCAGATATCCTTAATTTGAGCTGACGTTTAGTTTGACCTATATAGGCCAGTCCACAAGGGCATTTTAGAAGGTACACAACATGTGTACTGTTACAATTAATAAATGAAGAGATAGAATATTTCTTGCCAGTGCGGGGATGTGAAAATTCCTTCGTATTAGTCGAATTCGAGCATTGCGCGCAATTACCACATTTATAAAAACCAAGGGGTGGGTTTGAAAGCCAAGTAGTCTGAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189918 lncRNA downstream 12719 3139180 ~ 3140180 (-) False LOC120573530
XR_005641447.1 lncRNA downstream 242274 2908630 ~ 2910625 (-) True LOC120572441
TU189845 lncRNA downstream 328281 2824313 ~ 2824618 (-) True G140762
TU189844 lncRNA downstream 328668 2822870 ~ 2824231 (-) True G140761
TU189832 lncRNA downstream 423280 2729281 ~ 2729619 (-) True G140753
TU189980 lncRNA upstream 127077 3280413 ~ 3433666 (-) True G140855
XR_005641695.1 lncRNA upstream 165689 3319025 ~ 3321057 (-) True LOC120573362
TU189989 lncRNA upstream 165982 3319318 ~ 3320719 (-) False LOC120573362
TU189982 lncRNA upstream 265924 3419260 ~ 3433666 (-) False G140855
TU190001 lncRNA upstream 281724 3435060 ~ 3435360 (-) True G140874
XM_039823321.1 mRNA downstream 9710 3139121 ~ 3143189 (-) True LOC120573530
XM_039823055.1 mRNA downstream 24283 3117234 ~ 3128616 (-) True c14h4orf54
XM_039822857.1 mRNA downstream 334240 2812555 ~ 2818659 (-) True si:dkey-219e21.4
XM_039822910.1 mRNA downstream 355368 2678945 ~ 2797531 (-) False pde5ab
XM_039823056.1 mRNA upstream 13532 3166868 ~ 3252975 (-) True focad
XM_039823625.1 mRNA upstream 302184 3455520 ~ 3457848 (-) True LOC120573709
XM_039822508.1 mRNA upstream 650650 3803986 ~ 4118384 (-) True adam19a
XM_039821295.1 mRNA upstream 1103299 4256635 ~ 4259813 (-) True ing2
XM_039823282.1 mRNA upstream 1149309 4302645 ~ 4312866 (-) True slx1b
TU189682 other downstream 1094708 2051481 ~ 2058191 (-) True G140615
TU189195 other downstream 2701229 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 2725415 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 2733893 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 2735818 417010 ~ 417081 (-) True trnam-cau_41
TU190151 other upstream 1001588 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 1121315 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 1121315 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 1121315 4274651 ~ 4275274 (-) False G141027
TU190197 other upstream 1121315 4274651 ~ 4275274 (-) False G141027

Expression Profile