RNA id: TU190189


Basic Information

Item Value
RNA id TU190189
length 551
RNA type TUCP
GC content 0.52
exon number 2
gene id G141027
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4274651 ~ 4275274 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTTGGTGTTGCCAGTCGGATCTGCAGTGCCATATGAGCCTTCACACACACCACTTTTGTTTTCTCGTCCGTCAGGCTGTAGTTTCCTGCATTCAATTCGGTGGGGGGAGTAGGTTGAGGAGGAGTTTTAGGTGTGGTAGTCGTAGTTGGAGGTTTGGTGGTCGTAGTTTTGGGAGTCGTAGTTGGAGCTTTGGTGGTCGTAGTTTTGGGAGTCGTAGTTGGAGCTTTGGTGGTAGTAGTTTTGGGAGTCGTAGTTGGAGCTTTGGTGGTCGTAGGTTTGGGAGTCGTAGTTGGAGCTTTGGGGGTCGTAGGTTTGGGAGTCGTAGTTGGAGCTTTGGGGGTCGTAGGTTTGGGAGTCGTAGTTGGAGCTTTGGGGGTCGTAGGTTTGGGAGTCGTAGTTGGAGCTTTGGGGGTCGTAGGTTTGGGAGTCGTAGGTTTGGGGGTGGTTTTCGTGGCCGGGACAGATGAAGATTGGGGGCTGAACTCAAAGGCAGGGGACACGGTTGCAGGAGGTTTGGCCTTTTTTTCATCTTCAGCCAATGACAGTgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190146 lncRNA downstream 63881 4209167 ~ 4210770 (-) True G140999
TU190144 lncRNA downstream 209911 4064196 ~ 4064740 (-) True G140997
TU190063 lncRNA downstream 600188 3674091 ~ 3674463 (-) True G140926
TU190054 lncRNA downstream 688394 3582712 ~ 3586257 (-) True G140917
TU190053 lncRNA downstream 688394 3583757 ~ 3586257 (-) False G140917
TU190219 lncRNA upstream 38904 4314178 ~ 4315544 (-) True G141041
TU190220 lncRNA upstream 43627 4318901 ~ 4319642 (-) True G141042
TU190303 lncRNA upstream 55880 4331154 ~ 4332019 (-) False LOC120573533
TU190317 lncRNA upstream 203156 4478430 ~ 4482046 (-) True G141109
TU190321 lncRNA upstream 203156 4478430 ~ 4482046 (-) False G141109
XM_039821295.1 mRNA downstream 14838 4256635 ~ 4259813 (-) True ing2
XM_039822508.1 mRNA downstream 156267 3803986 ~ 4118384 (-) True adam19a
XM_039823625.1 mRNA downstream 816803 3455520 ~ 3457848 (-) True LOC120573709
XM_039823056.1 mRNA downstream 1021676 3166868 ~ 3252975 (-) True focad
XM_039823321.1 mRNA downstream 1131462 3139121 ~ 3143189 (-) True LOC120573530
XM_039823282.1 mRNA upstream 27371 4302645 ~ 4312866 (-) True slx1b
XM_039823323.1 mRNA upstream 46490 4321764 ~ 4331757 (-) True LOC120573533
XM_039822737.1 mRNA upstream 56989 4332263 ~ 4351683 (-) True pygmb
XM_039821578.1 mRNA upstream 78327 4353601 ~ 4368352 (-) True sf1
XM_039821577.1 mRNA upstream 78327 4353601 ~ 4368208 (-) False sf1
TU190151 other downstream 119104 4154924 ~ 4155547 (-) True G141003
TU189682 other downstream 2216460 2051481 ~ 2058191 (-) True G140615
TU189195 other downstream 3822981 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 3847167 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 3855645 418935 ~ 419006 (-) True trnam-cau_42
TU190366 other upstream 366221 4641495 ~ 4664198 (-) True G141145
TU190380 other upstream 385347 4660621 ~ 4661111 (-) True G141159
TU190477 other upstream 683405 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 824431 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 1321684 5596958 ~ 5600462 (-) True G141400

Expression Profile