RNA id: TU190220


Basic Information

Item Value
RNA id TU190220
length 742
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G141042
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4318901 ~ 4319642 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcCAGTAAATTATTTAAGGATaagaataaataaacaaaaataatgttATAATCAAATTTCAGAAAGCTGCAGTGAACACTAAAGTTTTCAAATTTTCACAGAAGGCTTTTACACGTCAacaattttgttttcattacttagaatgggggagacagaaactacgcactatagctttaactacatttaatattgtatgtggagttgaaaatgttccaccaaaacaagttccttcccgagactattttgcagataGACCATCGCTGCATCTGGagcaagacaattgtgattggtttaaagaaatgcaaacaacccagagcgtttttttctcctatcccagaatgtatctgtagTGTAGCTAGACCTTATGCTGCAGCGCAGTGGACAGAGCCAGAGTAGGACTaattttcagccctggagtttcatgccttagaccggcccactttacttcacgactgactatattaaaggtcccatgacatggtgctctttggatgcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaataccgtatctgaagtctctttcccgaaattcagccttggtgcagaattacagccactagagccagtcccacaatgagctttccttagtatgtgccatttctgtgtctgtagctattgaggaggagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190219 lncRNA downstream 3357 4314178 ~ 4315544 (-) True G141041
TU190190 lncRNA downstream 43627 4274651 ~ 4275274 (-) False G141027
TU190194 lncRNA downstream 43627 4274651 ~ 4275274 (-) False G141027
TU190195 lncRNA downstream 43627 4274651 ~ 4275274 (-) False G141027
TU190199 lncRNA downstream 43627 4274651 ~ 4275274 (-) False G141027
TU190303 lncRNA upstream 11512 4331154 ~ 4332019 (-) False LOC120573533
TU190317 lncRNA upstream 158788 4478430 ~ 4482046 (-) True G141109
TU190321 lncRNA upstream 158788 4478430 ~ 4482046 (-) False G141109
TU190329 lncRNA upstream 164096 4483738 ~ 4484782 (-) True G141114
TU190330 lncRNA upstream 166261 4485903 ~ 4486466 (-) True G141115
XM_039823282.1 mRNA downstream 6035 4302645 ~ 4312866 (-) True slx1b
XM_039821295.1 mRNA downstream 59088 4256635 ~ 4259813 (-) True ing2
XM_039822508.1 mRNA downstream 200517 3803986 ~ 4118384 (-) True adam19a
XM_039823625.1 mRNA downstream 861053 3455520 ~ 3457848 (-) True LOC120573709
XM_039823056.1 mRNA downstream 1065926 3166868 ~ 3252975 (-) True focad
XM_039823323.1 mRNA upstream 2122 4321764 ~ 4331757 (-) True LOC120573533
XM_039822737.1 mRNA upstream 12621 4332263 ~ 4351683 (-) True pygmb
XM_039821578.1 mRNA upstream 33959 4353601 ~ 4368352 (-) True sf1
XM_039821577.1 mRNA upstream 33959 4353601 ~ 4368208 (-) False sf1
XM_039821582.1 mRNA upstream 33959 4353601 ~ 4367232 (-) False sf1
TU190189 other downstream 43627 4274651 ~ 4275274 (-) True G141027
TU190191 other downstream 43627 4274651 ~ 4275274 (-) False G141027
TU190193 other downstream 43627 4274651 ~ 4275274 (-) False G141027
TU190197 other downstream 43627 4274651 ~ 4275274 (-) False G141027
TU190151 other downstream 163354 4154924 ~ 4155547 (-) True G141003
TU190366 other upstream 321853 4641495 ~ 4664198 (-) True G141145
TU190380 other upstream 340979 4660621 ~ 4661111 (-) True G141159
TU190477 other upstream 639037 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 780063 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 1277316 5596958 ~ 5600462 (-) True G141400

Expression Profile