RNA id: TU190239


Basic Information

Item Value
RNA id TU190239
length 450
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id G141054
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4358921 ~ 4359458 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTCCGTGAGGTCCTGGACCCTGGCCaataggaggaggagggggctgCATCCAGGGGGGAGGCAGGCCGTTGGGGTTTGGGGGCATAGGGGGGCCTCCCATGTTGGGCATGGGGGGAGGGTAGTTGTGGGGTCCTCCATGACCACCATGCCCTCCGTGCATGCCATGGTAGTTCCTGTTCTCAGTCGGACCAGAGCTCATCCAAGGAGGCCGGTTCTGCTGTTGTGGCTGATTATTGTTGGGTCCTGAGGACCGATGCCCTCCGCCTTGGGTGTTGGAGTGTCCTCCACCAGATGTGGGGACAGGAGCCTCCCCTAGCTCAGCCATCAGGGACAGATACTCCTTGTCCATACGAGCCTTGTCCTGGGCTGACTGAGGAGGCTCGCCACCTGTTGCTCTGTGGGCGGCGAATGAGCTACACAAAGCAAAACAGCAACACCGTTACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190223 lncRNA upstream 16615 4332302 ~ 4342306 (+) True G141045
TU190227 lncRNA upstream 18958 4338533 ~ 4339963 (+) False G141045
TU190222 lncRNA upstream 26934 4330856 ~ 4331987 (+) True G141044
TU190062 lncRNA upstream 684453 3674091 ~ 3674468 (+) True G140925
TU190024 lncRNA upstream 779574 3523111 ~ 3579347 (+) True G140896
TU190237 lncRNA downstream 7103 4366561 ~ 4368337 (+) True G141052
TU190277 lncRNA downstream 128282 4487740 ~ 4487994 (+) True G141079
TU190278 lncRNA downstream 128823 4488281 ~ 4488527 (+) True G141080
TU190280 lncRNA downstream 130535 4489993 ~ 4490601 (+) True G141082
TU190283 lncRNA downstream 133219 4492677 ~ 4493034 (+) True G141084
XM_039823283.1 mRNA upstream 43376 4313151 ~ 4315545 (+) False zgc:112271
XM_039823284.1 mRNA upstream 43376 4313346 ~ 4315545 (+) True zgc:112271
XM_039821980.1 mRNA upstream 59331 4286328 ~ 4299590 (+) True LOC120572661
XM_039821979.1 mRNA upstream 76250 4271925 ~ 4282671 (+) False si:ch211-212k18.7
XM_039821435.1 mRNA downstream 87951 4447409 ~ 4479287 (+) True rtn3
XM_039821432.1 mRNA downstream 87951 4447409 ~ 4479287 (+) False rtn3
XM_039821433.1 mRNA downstream 87957 4447415 ~ 4479287 (+) False rtn3
XM_039822099.1 mRNA downstream 137990 4497448 ~ 4511964 (+) False si:dkey-28a3.2
XM_039822101.1 mRNA downstream 140250 4499708 ~ 4511964 (+) True si:dkey-28a3.2
TU190185 other upstream 43383 4313159 ~ 4315538 (+) False zgc:112271
TU190186 other upstream 43383 4313366 ~ 4315538 (+) False zgc:112271
TU189948 other upstream 1054290 3256551 ~ 3304631 (+) False mllt3
TU189860 other upstream 1455350 2828052 ~ 2903571 (+) False ablim2
TU190255 other downstream 81180 4440638 ~ 4444947 (+) True G141060
TU190258 other downstream 124234 4483692 ~ 4487607 (+) True G141063
unassigned_transcript_682 other downstream 1669182 6028640 ~ 6028713 (+) True trnat-agu_5
unassigned_transcript_684 other downstream 1877545 6237003 ~ 6237074 (+) True trnaw-cca_15
XR_005641634.1 other downstream 2229493 6588951 ~ 6640245 (+) False LOC120573071

Expression Profile