RNA id: TU190430


Basic Information

Item Value
RNA id TU190430
length 4998
lncRNA type sense_over
GC content 0.48
exon number 4
gene id peli3
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4773628 ~ 4829162 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAAGAGACATaaaaaaaaaaaaaaacaacatgatcaGACTCAGCAGGGAGACAAGCCAAacagaaaagagacagaaggtGACAGATAGGCGAGCTCCGTGCTTTTTATTAACAAACAACACCTAGTGAGTGCCTTTATTAAGCCATTGAACAGCGAAGGACAAGTGTGCAAAtgaccccccccacacacacacacacacacacacacacacatacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctgtttccTTCCCTACCCCTTAATGTTGGATTCCAGTCCTACACAGGGCTGAGAAACACAAGGCTAAAAATGCATCTGTGGAAAATTATgccaccccacccacccacgACTCATTTCCGAGCGGTGCCAACAGGACCATAAGTAGCTGACGTCACTCTGATCACTCCAGAATTGACGAGCATCTGACTGAGCATCAATCAGCGACGAGGCTTTTGTTCTCACCGTAACGTGGACTCGTGTATATTCAGCTTTCGTGTTGGTTCTCGTGGCAGAGAGAACCAGGACTGCAACCAAAGCCTGGGTGAGACTCCCTTATCCGAGTGGAGGGGGGCCCCAGTCGGGGAGCATTCTCCAGGAATTCCTCACGTTGCAGTGACATGGCTGGCTGGAGGGGGAGAGTCGGGAGTTCATATCCGGTCAGCGAACCCGAGACCAGTCAGTCCCTGAACCTCCAGACGCAACGACGCGTGCGACGCCGCCCGACTGTGGTCTGGAACAGAACGCCATTTAGCTTCTGTTCAGCATGCATCTCCCTGCGGTGGAGAACCGAGAAATCAAAGCGCGAGTTCTCACAAGGCCCTTTATGCTACTTCAGTTACAGTGCGTTCACCCTTTGACCAGCTTTTCCGGTTCTTTGTAAAACGGGGTAAAAAAAGTTGCGGCTCAGATTGACTAGGGCTCACAGAAGTTTTACACGAGTGTCTATgagggcaggtgtgtgtgtgtgtgtgggggggtgctCCTTTCCTCACATTCCTGCCAGTTTCCCTGGAAACGCCACTGAGACCTAACACAGCCGTGAGAAGCAGAGAGGCACTCAGAGCTCCAGGGCATGGAACCGTTTGTTTCTCGATCAGGACGGCAAAATGGCGAACGGACCTCGAGTTGAGGTTATTCTGACGTCAAAGAATGAAATGTCACGCTCAAAAACGAGTAAACTTTGAACAACTGACAGATCATCGATTACGCCTAAACACGTTTTTGAAGATGGCTCCAGAACTTCCCAGAGATGTCTTCAAGTGTCCATGTCCACATGATTATAGACATGTCTTCGATAGAGGTCTGGCCGTGTTGAACGTGAAAAGACCTCAGTGCACTTCAAATGGCGTGCGTCTGAAACCCCCTTTTTTGACGTTGTGGGACAACAAAACGCTTGGCCTAGTTAAAAGTGCATTTGAAGTTATACTGAGGCAGTGGGAATTATTGTCACGGACTCCCAATGTAAAAAGAAGAGTAACACCGGTGGCACAAGCTGGAACACTGAAGCATCATGGGAAGCCGAAATGCACAGGGACATGAAAAGACAGGCGTCAACCACGTTTCCAAACAGAACACAATTGTGCTTTCAGGGAAGGAACAGCAGCTTTGCAAGGCGCCCCCACACCCCCAAACCCCCgaggcagacacacacccacaccacatCTCCACCTCAGCTTCATCTGCAAACAAGCAAGAAGAAAATGACACCCTAAAACCTACTCCGTCACATACTAACTAAGCATGAGAGTTTAAACTAATTGTACAAGTTGTCTCTATCAATGAGAaactaaaaattaaaaaaaatggtaaaaCCACAATAATAAAACAGTAATTGTAAGCTCAACGCAGAGAATTGCCAATTGCTTCTCTTTAAGTTAAACTGCTTgtgtgtgtcccccccccctcacatCTCACCGCGTGTACGCAGCGTTACCTGCCCTTGGACTGTTATATTTAGTGTCATTCCAGGAAGTTGCCGTGCTAAATGTTACAGCATTTTGTCACATtgctttcttttgtgtgtgtgaaatgaagactgaaaaaaataaaataaaatgaccaAACTACCCTCCGCCTCCGTCCCCGCTCTGACGTGTACGTGTGGAATTAGCCGACCTGCCAGTGGGTCCTCTTCTAACTCGAGTGTTGAGCGGGGACTTTGGTTGGAGAAGCTCTTGGTTAATGCTTCTGTCCGAACTAACTACAATCTGTCTTTGCGTGGAGCTCTCTCTCCACATTATAGTTTACAGAGAAGGGTCCTTTGGGTGAGTACCGGCATTAACTTTTTGAGACCAATTTCATTTCGGCGGAATCGCCGCAAAGTAAATCTGCACTGCTTCCCCTGGTTTGACTTTGGTGAATTCTTTTGACACGTGGATTTGTGCCATTGACCAATCGCAAACCATCGtgagacctttttcacggcagacatgttgacatgtcatagcaggaaaagcacaggtgtattcaaaaccattactgatggctgcattccacttaggagaggccctggtattgggcatgctgactcactgaaatagcttactgggacacttgatggaattgagccatcgttaaagggatacgccaccatttgttgaaataggtcttatcacgggctcccctagctgtaggtgggccaatgcattttttgtgcatgctttgttttagtccggtgcaacgcCAGCAGCgccgccgccgctagttagcttagcgtagtgaatggaatcctatgttgccggttagcatgctaTGAGTAacagtgagccaacaaaagacaaaaaaacaacctaattaatggcactgagacaaaaaatgcattggcccacctatctacagccagggtagaccgtgataagcccttaAAGGTTaccaatttcagctgtgcttttcctacgaCAAGTCaaatctgctgtgaaaaaggtccagaGGGAACTAGAGGCTATCGTATTAGCTGTGGTGTACCGTCCGCGTTCATGTAAACATTCCCAGCAAAGAGAAACGGTTTGCAGACAGGAGTCGATGGTGCAACTTTGTCTTTTGAGTAAACGGTTAACTTACTGTTAGCGACCGAGCTAGCTGACAATGATAAAAGTTAGCTCCCCAGCCACAGCGGCTTGCCAAATAGCCCCACAAGTGCTCACTATGCTACTTAAGCTTGTTTTTTCGCGAGAATGCAAAATAAATATCGCTTTGCACTTCGGTATGCTTCAAATGAAATGCTTGTCGGATGGACTGACAGCATCTAAAAACCCCGTTTCCGTGGTGCATCTTCGCGGGGAACTGCATCTGACAATTTCTGGAACTTTAATCCGGCAATCACGCTCACTTTATGCAGCCATTGGctgtgtgtgaagagttgtgaaAGCAAGCATCTACTTCAGTCGTCCGTGTACAGTACCTTAAAAGGTGTGTTCAGACAGAACGTGAGGCAAATTTTagagctttgcataaaaagtcaaTGGAATGGCTCGAGTACTTTTGTGTTTTAACtagagcaacaacaacaaaaaagtaacaTTCTACAATCGGTGGCTGATATAATAGTTTTAATATGGTGTTTTAAATGGGCTTGGCTCAACGGGTGGAGAAAACAGCAATACACATGCCTAAAGCCTTTGGCAATGAAAGGGGATGTCACAAATTGAATGCCAAGTGTGGCGGATTGCCTGTGGCCAAGCTGCAATTTGATTGGCTATTTGCCAAGTACTGTTGTCGTCATTTGCTCGTTGCTGGCAGAGGTTAGTATTTCCTTTAATGGACGGCGCATACAAACGGGCAATTGAGCAGCATGACAGAAGCTGAGGAGAACCGGTATGTGCCCAGTCGGATCAAACTGTGTGGGTTAAACTCACGTAATTGACGTAACGAGAAAAATTCCCTTTGCTTCCTGTCTGAACACACCTTGTGAGAGTGTGAGCTGAGGGAGAGGCCAGATGGAGGGAGAGGTGGCACGCCGTATGGGCTTTCCCTGGATCCTCGTCAAGAAATGGCAATGATGAGTCACTGTTCAGGAACACTTCCTGCTGTGTACGGAGCATCTACAGTGGGCGACTCAGGCACAATGCacctgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaTTATTCCAGGGATGAAAAGCCTGGGCTGGGGTGAGTTGGAGGGGAGGGGTGGCCCTAAGAAGGAGATCagcaaagacagacacagactgagGAGAAAAGTGTTtggcttaaatctctttaacCTCTGCCACCCTACtactgtgtttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagatataAGCTCACGGTATCTAAACCTAAATCTCCCACTGCCTTCATTCCACTCTAAATCAATACCAATCTTCCTCCCCGTATCTGTTTTCTATCTGTCTGGGTGTCTGTTTCTGTCCCTCCCTCACAGACTGCTTGCTTTGCTCTCCCACCTGTTTGATGGGTGTCCAGGCCCCAAGTTTCAATCTGTTTTCTGATCTTAACACTCTCACAGTTTACTCCTCTGTTCGGCCAACCATCCCCAGATGTCCAGGCAGGCTGATAGAAGGGGAGTCGGGGAGCGGGGAGGGTTACAGGGTGTTATGGAGGAACGGTGGGGTGTGTGGAATTGGCGGAGATGACGGAAGGGAACACGGCAGGAGAAGAAAGGGAGATTTCGGTGGAAGTGGTGGAGGTGATGGTCAGGGTGGTGGGTCGGTTGGGGCGGGGGCGGGGTCTTTTAACAGCAGCCCCCTCCAGACTGCCGGACGGGGGTGCTCTCGATTTTTAAGTTGGGCTTGTCGCCGCCGGCTGTGGCCCCGGGACCCATGCGCTTCTTGATCTCTGCAGCCATGGTCATGAAAGCCTGCTCTACGTTGGTGGCGTTCTTGGCGCTCGTCTCCAGGAAGGGGATGGCCAAAGAGTCGGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190453 lncRNA downstream 10536 4770972 ~ 4772477 (-) True G141202
TU190441 lncRNA downstream 52014 4728098 ~ 4730999 (-) True G141193
TU190376 lncRNA downstream 126681 4654164 ~ 4656332 (-) True G141155
TU190340 lncRNA downstream 256819 4514007 ~ 4526194 (-) True G141123
TU190332 lncRNA downstream 293509 4489300 ~ 4489504 (-) True G141117
TU190458 lncRNA upstream 30062 4834450 ~ 4834895 (-) True G141207
TU190456 lncRNA upstream 48070 4852458 ~ 4853807 (-) True G141205
TU190463 lncRNA upstream 130894 4935282 ~ 4935501 (-) True G141212
TU190465 lncRNA upstream 139661 4944049 ~ 4947979 (-) True G141214
TU190466 lncRNA upstream 141031 4945419 ~ 4947979 (-) False G141214
XM_039823547.1 mRNA downstream 255001 4518376 ~ 4528012 (-) True ecsit
XM_039823549.1 mRNA downstream 255009 4518376 ~ 4528004 (-) False ecsit
XM_039823548.1 mRNA downstream 255019 4518376 ~ 4527994 (-) False ecsit
XM_039822102.1 mRNA downstream 284806 4486570 ~ 4498207 (-) True si:dkey-106g10.7
XM_039822103.1 mRNA downstream 284807 4486570 ~ 4498206 (-) False si:dkey-106g10.7
XM_039823408.1 mRNA upstream 233730 5038118 ~ 5084391 (-) False sstr1b
XM_039823407.1 mRNA upstream 233730 5038118 ~ 5084391 (-) True sstr1b
XM_039822976.1 mRNA upstream 310606 5114994 ~ 5119327 (-) True znf16l
XM_039822974.1 mRNA upstream 408750 5213138 ~ 5244957 (-) True LOC120573313
XM_039822981.1 mRNA upstream 515409 5319797 ~ 5335717 (-) False LOC120573316
TU190366 other downstream 118815 4641495 ~ 4664198 (-) True G141145
TU190380 other downstream 121902 4660621 ~ 4661111 (-) True G141159
TU190189 other downstream 507739 4274651 ~ 4275274 (-) True G141027
TU190477 other upstream 154291 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 295317 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 792570 5596958 ~ 5600462 (-) True G141400
TU190759 other upstream 939171 5743559 ~ 5843146 (-) False G141439
TU190760 other upstream 939171 5743559 ~ 5843146 (-) False G141439

Expression Profile