RNA id: TU190456


Basic Information

Item Value
RNA id TU190456
length 1350
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G141205
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4852458 ~ 4853807 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACTTTTAACTAAGAACTCAAAAACAATTCACAAGcagccctaatcctcttccgtaatTTAAAAGACACATAAATGATACAAATATAAGTGTCaccatatgggacctttaaagaattACCTGCCAGGTAGtttaatacacatatacagccatgtttcattcagagAATCTACTGCTTTACTTGCTCAGTCACATAAAAATGGATCCAAAAACTTTCCCCCGTATAGGATTTATTGCTGAAGACCCAAGCAGCCCACTTTCTCTTCACAGTTTAAGTATAGCTTATAGGAGTTTTATTTGCCATTTTTGAGTTCTCGCACTCTCAGAAGCACCTCAAACGTCACCAGCTGTGAGCTATGAATAACTTCCAACAAGTGGAGCGAGAGCCTAACAGTCCGCTCCGATGAAGAAAAGATCTTCCGTATTTACTATCCGGTTGTTTCACACTGAGAGGACTCTGGCTGGTTGTCACTGTATAAAAAGGcaaaattaaaataacattttcaaaaagaaaagcCAGTGATGCACCTTGATATCCCCTCTAGAGAATAAGAATAGTATACGATTGGGCAGAAGCCTAGGGCACACAACTATAAACAAAAGTTAaactttttttgtcagttttggcCATTATTTCTAGCTGGTTAGGATGACATTTAATGACAAAGTGTTGCTGAGGTCTGGTGAAGCAGTTCTCGGTCACTAGGCGACGTTAAAGCCCTGGGGCGTTtccttggaaaaaaaacaaaagctataTCTTCATTCCGTGTTTCTCACCACTATATGGTGTGTATCATTGAGGCAGttatgcaccgaatccaggattcggacgaatattgggctttttgatggGGTTGGATTTCTGCCGAAATTTTGAATTTATTTCCACCGAACTGAACCCTACGCTTGGTCGACGTACTGACGGCGCAGTTGATTACTGGAAGgcgtttacgtaggtggagcgttcaatgcagtaggctgtgagaaagtaaAAATGGAACTCacgagcagaaaaagtgttgtttggcagtactttcagtcaaaagaaggccattcaagtccagctacatgttcaatttgcaatgccgatttgtctcgtggtggcgaggaccctaaacaacacacaacatggccgctgttacgaCATTTGcatatgaaacatccgaaagaatgcAAGTTGTGCAATGTTGTTTACATgcgtttactgtgttaatggactgaggatgggtgtatgattcggtattcggtttcgaCAGACTCTTAACCAGGGGATTCGGTAtccggccgaaccccaaaaatctggattcggtgcatccctacactGAGGCCTAACAAAGtgttgaatgcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190458 lncRNA downstream 17563 4834450 ~ 4834895 (-) True G141207
TU190429 lncRNA downstream 23312 4773628 ~ 4829146 (-) False peli3
TU190430 lncRNA downstream 48070 4783013 ~ 4804388 (-) True peli3
TU190453 lncRNA downstream 79981 4770972 ~ 4772477 (-) True G141202
TU190441 lncRNA downstream 121459 4728098 ~ 4730999 (-) True G141193
TU190463 lncRNA upstream 81475 4935282 ~ 4935501 (-) True G141212
TU190465 lncRNA upstream 90242 4944049 ~ 4947979 (-) True G141214
TU190466 lncRNA upstream 91612 4945419 ~ 4947979 (-) False G141214
TU190480 lncRNA upstream 168786 5022593 ~ 5023085 (-) True G141222
TU190482 lncRNA upstream 181695 5035502 ~ 5036197 (-) True G141224
XM_039821481.1 mRNA downstream 23296 4793478 ~ 4829162 (-) False peli3
XM_039823408.1 mRNA upstream 184311 5038118 ~ 5084391 (-) False sstr1b
XM_039823407.1 mRNA upstream 184311 5038118 ~ 5084391 (-) True sstr1b
XM_039822976.1 mRNA upstream 261187 5114994 ~ 5119327 (-) True znf16l
XM_039822974.1 mRNA upstream 359331 5213138 ~ 5244957 (-) True LOC120573313
XM_039822981.1 mRNA upstream 465990 5319797 ~ 5335717 (-) False LOC120573316
TU190366 other downstream 188260 4641495 ~ 4664198 (-) True G141145
TU190380 other downstream 191347 4660621 ~ 4661111 (-) True G141159
TU190189 other downstream 577184 4274651 ~ 4275274 (-) True G141027
TU190477 other upstream 104872 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 245898 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 743151 5596958 ~ 5600462 (-) True G141400
TU190759 other upstream 889752 5743559 ~ 5843146 (-) False G141439
TU190760 other upstream 889752 5743559 ~ 5843146 (-) False G141439

Expression Profile