RNA id: TU190458


Basic Information

Item Value
RNA id TU190458
length 446
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G141207
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4834450 ~ 4834895 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTGCTCATGGAGAGTGTGTCTCTCCACCGCTGTGTGGCTCACCTCGGCAGGTCACTCCTCCACACGTATAAACTCCCAACATACGAACACGCCAGCAGCAGACAGGACAGCACTGACAGCCAGCATAAGCCGTCTGGAGGTACGAAGCCGCCATTGCTGTGTTCCATGTCCTCTGTCATAAGGTTTGGTGATAAATCCTCCTCCTCTGCCATAACGACTGCCGGTTGAGACTCAAGCAAACAACTACTCGGCACCGGGGCGGTTGGTGGACCATCTAACACGATAAAACATCCGCCAACATGAAGCGTAAAGATGCCATACACCTCCTTTCAAAACGTGAGCTAACGTTGCTAGCTGGAATACTAGCTAGCTCTCGCGGCGCTCTATAATGACGTCATcttatgttgctttttttttttttttcttcttcttcttcttcttctt

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190429 lncRNA downstream 5304 4773628 ~ 4829146 (-) False peli3
TU190430 lncRNA downstream 30062 4783013 ~ 4804388 (-) True peli3
TU190453 lncRNA downstream 61973 4770972 ~ 4772477 (-) True G141202
TU190441 lncRNA downstream 103451 4728098 ~ 4730999 (-) True G141193
TU190376 lncRNA downstream 178118 4654164 ~ 4656332 (-) True G141155
TU190456 lncRNA upstream 17563 4852458 ~ 4853807 (-) True G141205
TU190463 lncRNA upstream 100387 4935282 ~ 4935501 (-) True G141212
TU190465 lncRNA upstream 109154 4944049 ~ 4947979 (-) True G141214
TU190466 lncRNA upstream 110524 4945419 ~ 4947979 (-) False G141214
TU190480 lncRNA upstream 187698 5022593 ~ 5023085 (-) True G141222
XM_039821487.1 mRNA downstream 5288 4793478 ~ 4829162 (-) False peli3
XM_039821486.1 mRNA downstream 5288 4793478 ~ 4829162 (-) False peli3
XM_039821482.1 mRNA downstream 5288 4793478 ~ 4829162 (-) False peli3
XM_039821485.1 mRNA downstream 5288 4793478 ~ 4829162 (-) False peli3
XM_039821484.1 mRNA downstream 5288 4793478 ~ 4829162 (-) False peli3
XM_039823408.1 mRNA upstream 203223 5038118 ~ 5084391 (-) False sstr1b
XM_039823407.1 mRNA upstream 203223 5038118 ~ 5084391 (-) True sstr1b
XM_039822976.1 mRNA upstream 280099 5114994 ~ 5119327 (-) True znf16l
XM_039822974.1 mRNA upstream 378243 5213138 ~ 5244957 (-) True LOC120573313
XM_039822981.1 mRNA upstream 484902 5319797 ~ 5335717 (-) False LOC120573316
TU190366 other downstream 170252 4641495 ~ 4664198 (-) True G141145
TU190380 other downstream 173339 4660621 ~ 4661111 (-) True G141159
TU190189 other downstream 559176 4274651 ~ 4275274 (-) True G141027
TU190477 other upstream 123784 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 264810 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 762063 5596958 ~ 5600462 (-) True G141400
TU190759 other upstream 908664 5743559 ~ 5843146 (-) False G141439
TU190760 other upstream 908664 5743559 ~ 5843146 (-) False G141439

Expression Profile