RNA id: TU190480


Basic Information

Item Value
RNA id TU190480
length 333
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id G141222
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5022593 ~ 5023085 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgttattgtggcgtttcatttcccgtgtCCTGCGAGTGGCGGccgtgccgttgttttggccaGCGTGTGGCGCATCGTTTCCCtgatcgcgagtggcggccgtgccgttgttttggccggcgtgtggcgcctcatgaGGCCGCCTccaggcgtcctttccccgggcgcctcccggccgGCGTGTGGCACCTCATgaggccgcctcccggcgtcctttccccgggcGCCTCGGTCGAGAAAAACGTGTATATTTACACgagaaaaacgtttccgtgaacacgttcaatagattaagaataacgtgtacatttacacgaactgccgtgagactgg

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190465 lncRNA downstream 74614 4944049 ~ 4947979 (-) True G141214
TU190466 lncRNA downstream 74614 4945419 ~ 4947979 (-) False G141214
TU190463 lncRNA downstream 87092 4935282 ~ 4935501 (-) True G141212
TU190456 lncRNA downstream 168786 4852458 ~ 4853807 (-) True G141205
TU190458 lncRNA downstream 187698 4834450 ~ 4834895 (-) True G141207
TU190482 lncRNA upstream 12417 5035502 ~ 5036197 (-) True G141224
TU190491 lncRNA upstream 54543 5077628 ~ 5078216 (-) True G141233
TU190523 lncRNA upstream 185152 5208237 ~ 5208460 (-) True G141259
TU190665 lncRNA upstream 429207 5452292 ~ 5475138 (-) False nat16
TU190676 lncRNA upstream 536946 5560031 ~ 5564384 (-) False cd99l2
XM_039821481.1 mRNA downstream 193431 4793478 ~ 4829162 (-) False peli3
XM_039823408.1 mRNA upstream 15033 5038118 ~ 5084391 (-) False sstr1b
XM_039823407.1 mRNA upstream 15033 5038118 ~ 5084391 (-) True sstr1b
XM_039822976.1 mRNA upstream 91909 5114994 ~ 5119327 (-) True znf16l
XM_039822974.1 mRNA upstream 190053 5213138 ~ 5244957 (-) True LOC120573313
XM_039822981.1 mRNA upstream 296712 5319797 ~ 5335717 (-) False LOC120573316
TU190477 other downstream 62588 4958679 ~ 4960005 (-) True G141219
TU190366 other downstream 358395 4641495 ~ 4664198 (-) True G141145
TU190380 other downstream 361482 4660621 ~ 4661111 (-) True G141159
TU190189 other downstream 747319 4274651 ~ 4275274 (-) True G141027
TU190492 other upstream 76620 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 573873 5596958 ~ 5600462 (-) True G141400
TU190759 other upstream 720474 5743559 ~ 5843146 (-) False G141439
TU190760 other upstream 720474 5743559 ~ 5843146 (-) False G141439
TU190761 other upstream 720474 5743559 ~ 5782623 (-) False G141439

Expression Profile