RNA id: TU190724


Basic Information

Item Value
RNA id TU190724
length 283
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G141416
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5711434 ~ 5711716 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaTTTGTCATAACTTGTATCAGTGTGTTAGGCTGTAGCAGCACATCATTACTGGTAGttcttctctgtgttgccagtATGATGTGTGCTGCTGCCGTCAGACACACACTCCTCTTCATCACCATCTTCACTTAGGAACGGTTTTTGTACCTTTTTATACTTTTCTTGTAACCAATGAGAAcacattgatttttattttttttattttaatcaaataTTGGTCTGTAAGGACTGACAGAGATATGTTTGGCTATTGACTGTTACGCTGACTTTTAATAAAAGC

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190699 lncRNA downstream 126908 5584162 ~ 5584526 (-) True G141394
TU190676 lncRNA downstream 147050 5560031 ~ 5564384 (-) False cd99l2
TU190665 lncRNA downstream 236296 5452292 ~ 5475138 (-) False nat16
TU190523 lncRNA downstream 502974 5208237 ~ 5208460 (-) True G141259
TU190491 lncRNA downstream 633218 5077628 ~ 5078216 (-) True G141233
TU190757 lncRNA upstream 66067 5777783 ~ 5829468 (-) False G141439
TU190758 lncRNA upstream 66067 5777783 ~ 5829468 (-) False G141439
TU190833 lncRNA upstream 258235 5969951 ~ 5970613 (-) True G141467
TU190834 lncRNA upstream 259219 5970935 ~ 5971387 (-) True G141468
TU190837 lncRNA upstream 278179 5989895 ~ 5992227 (-) True G141470
XM_039823382.1 mRNA downstream 26773 5679826 ~ 5684661 (-) False rnaseka
XM_039823383.1 mRNA downstream 26789 5678216 ~ 5684645 (-) True rnaseka
XM_039823379.1 mRNA downstream 91169 5616677 ~ 5620265 (-) True med11
XM_039823376.1 mRNA downstream 128439 5560026 ~ 5582995 (-) True cd99l2
XM_039821609.1 mRNA downstream 236279 5424561 ~ 5475155 (-) False nat16
XM_039823385.1 mRNA upstream 15920 5727636 ~ 5735182 (-) True si:dkey-6n21.13
XM_039823386.1 mRNA upstream 29605 5741321 ~ 5757820 (-) True si:dkey-6n21.12
XM_039823387.1 mRNA upstream 73092 5784808 ~ 5821779 (-) True ache
XM_039823561.1 mRNA upstream 129701 5841417 ~ 5865750 (-) False LOC120573667
XM_039823560.1 mRNA upstream 129701 5841417 ~ 5855270 (-) True LOC120573667
TU190708 other downstream 110972 5596958 ~ 5600462 (-) True G141400
TU190492 other downstream 611352 5099705 ~ 5100082 (-) True G141234
TU190477 other downstream 751429 4958679 ~ 4960005 (-) True G141219
TU190366 other downstream 1047236 4641495 ~ 4664198 (-) True G141145
TU190380 other downstream 1050323 4660621 ~ 4661111 (-) True G141159
TU190759 other upstream 31843 5743559 ~ 5843146 (-) False G141439
TU190760 other upstream 31843 5743559 ~ 5843146 (-) False G141439
TU190761 other upstream 31843 5743559 ~ 5782623 (-) False G141439
TU190756 other upstream 66067 5777783 ~ 5843146 (-) True G141439
unassigned_transcript_681 other upstream 245335 5957051 ~ 5957132 (-) True trnal-aag_6

Expression Profile