RNA id: TU190837


Basic Information

Item Value
RNA id TU190837
length 2333
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G141470
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5989895 ~ 5992227 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATTTCAAACAGAGATAAAATTTAGATCACCAACATCAGTAACAACCACACATTCAACATGACTAAACATTATAAAAGCATGTACCATTGTCTAAAATTCCGTTTATTCTAGTTGCCTTGGAATTTCAGTCCCAACAGTAGTACCAGTCAGCAGTACCAGCAGAACAATGTCAAGTTCCAAACTCACCACTgaactcttctttttttcccccacgcTCTGTCTCAGTGGCTGCTTCCTGCTGTCTGGGAGGAAAACTAAGTGGCGTGTGACTCTCAGTAGCACTGTGTTAAATTGCATAAGACAGACTTGACATTTCCATCTCATCTGGTACATCAGTCCACTTGCAGTACATATGCATGGCTAATATGTAAACAAGGCTGTGATGCAAATCTCAAAATGTCTTTGGTTCAATAGTCACAATCCACAATGCAGTCCATCCCCACTGGGCCCGCTGACAGCTGGGCCAATCACAGATATAGGAATAACTTCCAAACAGTACAACTCTGCCTttatgagaaaataaaaaaaaatatattttaaaacatcAAGTGTAGTTCAAATATTTGTAATAATATACTGAGAGGGCTGTTTTTGACAGCATCTCAGGATTATGTGAACATTTAGAGAGTGGAGCCAGAAAACAAAGGACAATTCTGTTTCGTTACAGCCTCTGTCGTCTGCGATAGTCACGGCCCTCAATCCTATTGGTTATGATAACGTAACTGAATATGATAAATAAGACCTAAATAATGATTTACACAAACTAagcctacaaaaaaaaaaaaaaaaaacttaaagagAATAACTATTTGAACACCACTTGTGCGGTCTTGACTGGAAACATGTTAACTTGGCTCCTGTGTGACACACCCGTTATATCGGTATGAACACACTTCAGTGAAGGAACCCACTTTCAGTTTGCTTTTCACCTGCACGCTGTGTGCTATTTTCCTTGTTTCATGTTACCACACACATAACCAATAGGAATAATGGCaaatgctgtttaaaaaaaacaaaaaacactgaattttactttaaaaagttgtattctaaatttttctGATTGTCATCAAATCTTATGTGCGGAACCAAACCAACAATAACTGTATCTACTatcaagtatgtgtgtgtgcagctagTTGTGCGTTCCATGTACCTCTGAACTCGGAGCTGGGAGTTATGTCATACCCGAGTTGACCCCGTTCCTTTAAAACAAGTTGGATTTTCACAGTGgggttagctctagccaggttagccattgttagcaataacagttgataacaacgcattacgctgcttttttgtgcatacaaacagcgtagcaacatgtccacagatagaagttgaacAGGAATGTGTGCACGGCTGGTTTAATGaaacacaaataagacagaagtgcaaATAAAATTATGTTACTACAGCTAtcactactgttgatgcacggagcagccatgtttGATATTGAAATCCGACTTCAGGGGGCGCATTTCCGACTTCTgggtacaaatggaacgcactaaaAGCCTGATAAGATCTTCTTCCTCTGAGCCtaagagctccattgttgtcaaaaactattaaaacccATCAGTAAgtcacactgttgcactgggtgacatgttccttcattaccatgaacacacacactgtggtatATTTGGATTCAGTTGCATatacaccgtcctgctgcaGGAGATAAACACTAGAACTGCAAAACTGGATTAATCTGCCGTTGAATATAGTCCCTAATAAATGCACTAATTCCTCATGTTTGAATAACAATTGTAGAAACTACAGTAGCCTgctgttttttgtgttgtttttttaaaatgaattataTCTGTATAGCCATTTTTAAACATGAACATCTTGGGCAGGAACCAATGGTCTTGGAGCTGAGTGTCACCGACGAAGTCAGACAGTTTTGCATGCGAGATGAACTAACACGTTGTTAGAGTGGGTCTTTTCATGAGAAttgatgaaaatacaaaaaacatgaaatagcATCAGACTCATCATTTAGGTGATGCCCCTTTTATCTAATTACCCAATTCCCCGACCTAGTCTCAGTCCACTTGCAGTGCGTGACTAACTTTAAAAATCTGAACACACAATCCCCCACTGCCACACACGTTTAAATATATCCCATTTCCTCTACCCCACGCTCTTATcatacacactgtacacacacagctaaAGGGCCGGTCAATGCAAGGATCTTCCATTCTTAACAGAGTCTCCTCCCTAGTTAAACACTGTACAGCTGACACCAGAGCCAAAGATACACAGAACCAACGCTGTCAGTCCAGGCATGTTCAATCCCAGATTGTG

Function

GO: NA

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190834 lncRNA downstream 18508 5970935 ~ 5971387 (-) True G141468
TU190833 lncRNA downstream 19282 5969951 ~ 5970613 (-) True G141467
TU190757 lncRNA downstream 160427 5777783 ~ 5829468 (-) False G141439
TU190758 lncRNA downstream 160427 5777783 ~ 5829468 (-) False G141439
TU190724 lncRNA downstream 278179 5711434 ~ 5711716 (-) True G141416
TU190999 lncRNA upstream 163825 6156052 ~ 6157413 (-) True G141601
TU191007 lncRNA upstream 207081 6199308 ~ 6205730 (-) False gal3st4
TU191019 lncRNA upstream 273213 6265440 ~ 6266025 (-) True G141612
TU191020 lncRNA upstream 273924 6266151 ~ 6266583 (-) True G141613
TU191040 lncRNA upstream 316671 6308898 ~ 6309895 (-) False sox19b
XM_039823409.1 mRNA downstream 22467 5959440 ~ 5967428 (-) True vgf
XM_039823468.1 mRNA downstream 34835 5946032 ~ 5955060 (-) True snapc2
XM_039823450.1 mRNA downstream 68024 5901924 ~ 5921871 (-) False LOC120573619
XM_039823454.1 mRNA upstream 5891 5998118 ~ 6005218 (-) True serpine1
XM_039823010.1 mRNA upstream 166631 6158858 ~ 6185624 (-) True trappc14
XM_039823011.1 mRNA upstream 166631 6158858 ~ 6178209 (-) False trappc14
XM_039823013.1 mRNA upstream 185694 6177921 ~ 6205783 (-) False gal3st4
XM_039823018.1 mRNA upstream 194084 6186311 ~ 6220260 (-) False gal3st4
unassigned_transcript_681 other downstream 32763 5957051 ~ 5957132 (-) True trnal-aag_6
TU190759 other downstream 146749 5743559 ~ 5843146 (-) False G141439
unassigned_transcript_683 other upstream 36614 6028841 ~ 6028922 (-) True trnas-uga_22
XR_005641400.1 other upstream 229744 6221971 ~ 6231297 (-) False LOC120572220
XR_005641401.1 other upstream 229744 6221971 ~ 6226806 (-) False LOC120572220
XR_005641774.1 other upstream 343267 6335494 ~ 6335632 (-) True LOC120573734
XR_005641775.1 other upstream 344394 6336621 ~ 6336759 (-) True LOC120573735

Expression Profile