RNA id: XM_039823555.1


Basic Information

Item Value
RNA id XM_039823555.1
length 2661
RNA type mRNA
GC content 0.53
exon number 2
gene id sox19b
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6308898 ~ 6315817 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTCCCATTGGTCCACACCCCGGCTGACTGCACGAGAACAGGGGAACTTTTGCCGTGAACAGGCAGATGAGTTCAGTGTGTGAGTTTGGCCGTCTGAcaacaagtgttttttttccgcGGAGAACTGTTTCACAGCACcaaggagagagaggcagctgCTCACTTTAAAATATAACCTAAGTATCAAAGTAATGACCGCCACAACCTGACTTATCATTTAAGAGAATACCTGGTCGTCCGTTGCGGTGTTTTGTGTCCCGGGTGCGTCGTGAGTAGACTAATTAGTTGATTCGCATCACCCGGCAATTCCCGGTTCAATCTGCAGGGAAACCTGGCCAGAAGTCGCCAGGTGGACGGCGACAAAGGCTCCTCGTGTGTTCGGCGTTTCGACTCTTCCGTAACTCCGCTTAACTTGACTACACCTGCCCCGACATGTACAGCATGATGGAACACGAGCTGAAGCCAAGCGGCCAGCCGCCTAATCACCAGACCTCCCAGGGAATGTCGCCAATCACCGGCAACATGACCGGGGGCATGGGCGGCAATGGCAACTCTCACCCGGGCTCCAAAACGGCATGCGCACCCGGAGTCGACCCCATGGATAAAGTCAAGCGGCCCATGAACGCCTTTATGGTCTGGTCCAGGGGACAGAGGCGCAAGATGGCCCAAGAAAACCCCAAAATGCACAACTCCGAGATCAGCAAGCGGCTGGGAGCGGAGTGGAAACTCCTGACCGACGCTGAGAAGCGGCCTTTCATCGACGAGGCCAAGCGGCTCCGGGCGGTCCACATGAAGGAGTACCCCGACTACAAGTACAAGCCCCGCCGCAAGACCAAGCCCCTGCTGAAAAAGGACACTCAGATGGGCAAGTACCCACTGTCAGCGGGCAACCTGCTGGCGGCGGCGCAGGGCCAAGGTGGTAGTCCGAGGATGGACAGCTACGGCTGGGGCCCCGCCGGGGGGTACGCCGGCATGCAGGGCGAGGCGCTCGGCTACACACAGCAGCTCCACCGGTATGACCTGTCAGCGCTCCAGTACCCACCTTCAATGACGGCAGCACAGACGTACATGAACGGAGGCAACTCGTACAGCCCCATGTCCTACAGCAGCAGTCCCCAGCAGCACAGCCCCGTCACCATGTCCATGGTGAAAGCGGAGCCGGTGTCCCACTCGCCCCCGACGGGGACGCCCAGCCACCACCGGGGCCCTCTGCAGGGCGACCTCAGGGACATGATCAGCATGTACATCCCCGGCCCCGGGGGGGACGCCGGGGACCCCACGGCAGCACAGAGGGGCTACACCAGTGTCCAGCAGCACTACCTCACCGGGACCGTCCCACTCACACACATCTAGGACTGGAAGTGGGAGccgggggggatgggggggtgggggggtgaaCTGAGTGGGCGGAACAGAAATGCTCACGATGCACAGCTGGCTGGACAGGAGATGGGAGTCTGTGGGGGGGGACTTTAGACCGGCAAAGCAAAGAGACGTAAGACGTGAAGGAAAacccatttcctgcattcagtCTGAGTTGAGATGTGCCTGCAGTTACAGACGCACAAGAACCGACGACATTTTTATTCACTATTCATAGTTTTTCTACCTCTTTGGTGCCCCATCAGTTAAGATAAATGCCACCCGCTCCCACCAACCACCACCTGTACCCCCCCACCGCCGCTGACTGCTCTCCAGGAAGGACTGCAGCGAAGACAAGGGGCCACGTCTGTTTATTGTGTACATATAAGGAAATGTTTGTCTTattttttctgtcctcttttagactcctttttttttttttaaataccactTTAAACACTTGAGACCCTGGCACTCATGAGCCTTCCACCATACCCAGCAAGTGGCTGGGGGGAGGGCAGggggcggaggaggaggagctgttTGACCACGGAGCCAGTCCCCGCCGCCTGCAGCCACAGCACAGAGACACCTGTCCTGGCAACCATGTTTGACAGATCCCAATCTCTCAGCCGGTGACGGACCAATCACCTGAGCTGAAGTGCTCGGGTTGTCCTGATGTGTGGGCGGAGCCAGGGGGCCGGCAGGGGGAGAATGGGAAGGAAATGCACAACTTGAATGATgagctttttctttatttttttttcttttaacaaactCTTTGTGCCTTGGCTTTGCTTTAGTACTCTTgcatttttctgtgtttttttttttttaattttttttttaattttttttaacctgctgAAATCTAGTTGGATGACATGGGGAACCTCCCCCCCTGTTGGACAATCAACACTGCATCCACAGGAACTGAACAGAACACACTGGCTTCTATGATCTGTGGTGTCGCTAAATCCCGTTTCAGTAGGCCTGTAGTGTCCTCCGTCCCACCACACCACTGCTGGTTTTGCTGCCTGTATGAGTTTGATTTGCTGTATTAGTTTTAGATTTGATCTGTTGATATAAATGTTAAGATGCGTTGTTCTGGAGTCGCTCTGTGTGTTCATTGTCACTTTGCTCTAGGCAAgagttgtattttattttttatttttttttggctttttcagtaagtgaatgaaattaaatttgaaatgctgcatttcagttgttttattccaaacgGCAGATTAAGACTTGCAAATTATGTCTTCCACCAAGTAAACTGGATtggcaaa

Function

GO: NA

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191020 lncRNA downstream 42876 6266151 ~ 6266583 (-) True G141613
TU191019 lncRNA downstream 43434 6265440 ~ 6266025 (-) True G141612
TU191007 lncRNA downstream 103729 6199308 ~ 6205730 (-) False gal3st4
TU190999 lncRNA downstream 152046 6156052 ~ 6157413 (-) True G141601
TU190837 lncRNA downstream 317232 5989895 ~ 5992227 (-) True G141470
TU191049 lncRNA upstream 60181 6375998 ~ 6378372 (-) False tbc1d14
TU191105 lncRNA upstream 140122 6455939 ~ 6511995 (-) True G141667
TU191122 lncRNA upstream 242481 6558298 ~ 6645212 (-) True G141683
TU191127 lncRNA upstream 261360 6577177 ~ 6578755 (-) True G141688
TU191192 lncRNA upstream 1079342 7395159 ~ 7462473 (-) True G141741
XM_039821509.1 mRNA downstream 65790 6237573 ~ 6243669 (-) True tm4sf21b
XM_039821425.1 mRNA downstream 78162 6226997 ~ 6231297 (-) True LOC120572220
XM_039823017.1 mRNA downstream 89199 6186311 ~ 6220260 (-) False gal3st4
XM_039822037.1 mRNA upstream 15871 6331688 ~ 6340737 (-) True eif4a1a
XM_039822036.1 mRNA upstream 27812 6343629 ~ 6361111 (-) True senp3b
XM_039823095.1 mRNA upstream 50154 6365971 ~ 6367776 (-) True LOC120573386
XM_039821491.1 mRNA upstream 53869 6369686 ~ 6371100 (-) False LOC120572256
XM_039823420.1 mRNA upstream 60155 6375972 ~ 6416457 (-) False tbc1d14
XR_005641400.1 other downstream 78162 6221971 ~ 6231297 (-) False LOC120572220
XR_005641401.1 other downstream 82653 6221971 ~ 6226806 (-) False LOC120572220
unassigned_transcript_683 other downstream 280537 6028841 ~ 6028922 (-) True trnas-uga_22
unassigned_transcript_681 other downstream 352327 5957051 ~ 5957132 (-) True trnal-aag_6
TU190756 other downstream 466313 5777783 ~ 5843146 (-) True G141439
XR_005641774.1 other upstream 19677 6335494 ~ 6335632 (-) True LOC120573734
XR_005641775.1 other upstream 20804 6336621 ~ 6336759 (-) True LOC120573735
TU191048 other upstream 37647 6353464 ~ 6371093 (-) True LOC120572256
TU191047 other upstream 53881 6369698 ~ 6371093 (-) False LOC120572256
TU191399 other upstream 1466127 7781944 ~ 7787595 (-) False fcer1g

Expression Profile