RNA id: TU191493


Basic Information

Item Value
RNA id TU191493
length 329
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G141967
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 8198847 ~ 8199175 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCCTCTGTGTCCGAACAATCAGCAACACCTCCCTGTTGTAATACAGCAGTTGTTGAGGGTATAGCTTGATATGCACATGTCTGAGGGGGAAGTGCCCCAAACAATAGAGATGGTGGCAGAGGAGGTGTAGGTGGGGGCGGCAGGAAGTGTTCCGGCGATAGAGGTGGcgatgatgacaatgatgaaaGGGGTTGAGGAGATCCGGATGCCgttaggggtgcaaatagaccagGGGTGTTAGGAGGCGTACCTGAGGGGGTTGAATGaaaccactccagatcctctgggaagaaaaaaataacacattacaatcacagtagcatgaaa

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0019538 protein metabolic process biological_process
GO:0007281 germ cell development biological_process
GO:0006508 proteolysis biological_process
GO:0003006 developmental process involved in reproduction biological_process

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641436.1 lncRNA upstream 113527 8083438 ~ 8085320 (+) True LOC120572404
XR_005641445.1 lncRNA upstream 124857 8070182 ~ 8073990 (+) False LOC120572412
TU191472 lncRNA upstream 124873 8069786 ~ 8073974 (+) True LOC120572412
TU191467 lncRNA upstream 136986 8061399 ~ 8061861 (+) True G141943
TU191466 lncRNA upstream 137554 8061059 ~ 8061293 (+) True G141942
TU191554 lncRNA downstream 191640 8390815 ~ 8400539 (+) False LOC120573547
TU191555 lncRNA downstream 191640 8390815 ~ 8400539 (+) False LOC120573547
TU191553 lncRNA downstream 200493 8399668 ~ 8400539 (+) False LOC120573547
XR_005641443.1 lncRNA downstream 269524 8468699 ~ 8469569 (+) True LOC120572410
XR_005641442.1 lncRNA downstream 277239 8476414 ~ 8476831 (+) True LOC120572409
XM_039821683.1 mRNA upstream 138398 8057655 ~ 8060449 (+) True LOC120572385
XM_039821644.1 mRNA upstream 177966 8019236 ~ 8020881 (+) True LOC120572361
XM_039823143.1 mRNA upstream 188978 8005773 ~ 8009869 (+) True LOC120573420
XM_039821603.1 mRNA upstream 203419 7990198 ~ 7995428 (+) False LOC120572330
XM_039823331.1 mRNA downstream 106810 8305985 ~ 8314768 (+) True LOC120573542
XM_039821685.1 mRNA downstream 124600 8323775 ~ 8325576 (+) True LOC120572387
XM_039823334.1 mRNA downstream 168965 8368140 ~ 8370820 (+) True LOC120573544
XM_039823338.1 mRNA downstream 195310 8394485 ~ 8400539 (+) True LOC120573547
XM_039821675.1 mRNA downstream 207732 8406907 ~ 8408872 (+) True LOC120572377
XR_005641421.1 other upstream 201139 7990198 ~ 7997708 (+) False LOC120572330
XR_005641422.1 other upstream 201140 7990198 ~ 7997707 (+) False LOC120572330
TU191297 other upstream 477210 7718020 ~ 7721637 (+) False LOC120573538
TU191293 other upstream 481518 7716614 ~ 7717329 (+) False LOC120573538
XR_005641634.1 other upstream 1558602 6588951 ~ 6640245 (+) False LOC120573071
TU191556 other downstream 213504 8412679 ~ 8413237 (+) False LOC120573548
unassigned_transcript_686 other downstream 213506 8412681 ~ 8413334 (+) True LOC120573548
TU191535 other downstream 253765 8452940 ~ 8496546 (+) True LOC120572397
TU192067 other downstream 2319454 10518629 ~ 10519736 (+) False tmem88b
XR_005641749.1 other downstream 2502010 10701185 ~ 10702028 (+) False LOC120573689

Expression Profile