RNA id: TU191535


Basic Information

Item Value
RNA id TU191535
length 1698
RNA type TUCP
GC content 0.42
exon number 3
gene id LOC120572397
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 8452933 ~ 8496546 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCCATCCAGTAATGTTAATATAAGTGAACTGGGATATATTCATTAATCACTGCAGATTAAAAGAGAGCCAATCAAATCCCGACATTTCTAACGAGTGATGTTTAAGTCACATACTTGATGCACGTGATGATTCATTACCCAAGTTGGTTTCCAGTGGACTAAGTGGcattttgttattattgatACACATCTTTTTCCATTTCAGCCAAGCATAAAactgtttattttcaagtttacAATTGCTATCATGTTAACTGAAAGGGTTTCAACGTATGTGGAGAATGGTACAGAAATCTAAGAAAAAGGCATGTTGGATAGATTTGTGCATCAACAGGAAAACTCCATTTAAACACAAAGATGCAGAGTGAATGAACCCTTTACCAACATTATAATATAGGAGCAGGTCTCTGGTAGAAGATCATAACTTGACCCATGGAAACCTTTAGAATGAACCCAAACACTATCCAGAGATTGCAGCATGCACCAAATAACAATGATATAATGTGTTATCATAAGAGTCTCTGAGAACCAAACGTTCTGAGCCTAAATTGGTGCAAAGGCATTGCATTGGCAGGTTGGTGTGAGCGGCAAGATGAAAAGCAAAAGACACCCCGCCTCTCTAAACTCCTTTATAAGAGCTCAGCGGTAGAAATTCTCTTTACAGTGAAACGAACACACAATGAGGAACTTCACCTTGATAACACCTTTACCTCTCTGCAGCCTCAGTAAGTACTGATACTTGGTTATTCTCAGCACCAAATCATCTAACAAATCACCCACCAGCTTTCAACTTTTAAATAAGAACTGAATTATTGTTGTTGCATTAATACAGTAAGTGCTGCATTATACACTCAGGGATGAATCTCTTTCcgtctctgctgtttgtttcaggcTGGATCTCTGTCTCAGCTTCTGAGTCTCACACTGTGGAGGTCCAGTCTGGTGGAGGCGTCACTCTGATGTGCTCCAACATTTCCAGAGTTATAACTACAACAGAATGGTTCAGAGTGATCAACAGAAAGAAGCCCAGCTGTGTCTCCTCCATGAACCCAAATGATAGCAATGCTTCCTTCTGTGATGGATTTCAAAATAGATTTGAGATGAGCTCCAACATCTCTACTGTCTTTCTTAAAATCAAGAGAGTGGATTCATCGGACTCTGGACTGTATTTCTagacactgcATGCGTTGGCGTCTGAAGAGGTCTGCTTGCTTCGGTGGCCACGCCTTCTCTCCAGGGTACACTGCCCTGCGTGCTCAGTCGACGTCCTCGCTGGGCCAGCCCCCCGCTCTTCCTCGTTGTTGTACTTTAGGTTTCAAAAGGTGTATTTACAAAAGTTTGTATGGTAGGAGAACAAGAACAGTCCGTCAGCGTCTTTGTCTTCAATAGTGTTCTCTGTGTAGAAGGCGTCTGGTTTGCAGCCGTCAGCGTGCCGTTTCCGCGACTGCCTGAGACATTAATCATCTGAGACATGTCCTGAATGAATGTACCAGGGTTAATCAgcgccacacaaacacacaacatgtCATATGTCAGTGCTTGCCCTGTCAGCTAACTTCTCGAAACACTTCTCGtaacaataaactgaaacaACATAACCAAACTAAACCAACAGAAATGAAGGGAGAACTGGAGCAACAACAACTagcagacagagaagagagacactGCAGCCAGGCTTAAATAAACTGGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191554 lncRNA upstream 52401 8390815 ~ 8400539 (+) False LOC120573547
TU191555 lncRNA upstream 52401 8390815 ~ 8400539 (+) False LOC120573547
TU191553 lncRNA upstream 52401 8399668 ~ 8400539 (+) False LOC120573547
TU191493 lncRNA upstream 253765 8198847 ~ 8199175 (+) True G141967
XR_005641436.1 lncRNA upstream 367620 8083438 ~ 8085320 (+) True LOC120572404
TU191598 lncRNA downstream 118982 8615528 ~ 8616180 (+) False LOC120572401
TU191602 lncRNA downstream 156306 8652852 ~ 8689676 (+) False LOC120572403
XR_005641435.1 lncRNA downstream 192421 8688967 ~ 8689678 (+) True LOC120572403
TU191613 lncRNA downstream 250269 8746815 ~ 8747015 (+) False LOC120572381
TU191614 lncRNA downstream 258684 8755230 ~ 8755493 (+) True G142057
XM_039821695.1 mRNA upstream 5195 8445286 ~ 8447745 (+) True LOC120572394
XM_039821675.1 mRNA upstream 44068 8406907 ~ 8408872 (+) True LOC120572377
XM_039823338.1 mRNA upstream 52401 8394485 ~ 8400539 (+) True LOC120573547
XM_039823334.1 mRNA upstream 82120 8368140 ~ 8370820 (+) True LOC120573544
XM_039821685.1 mRNA upstream 127364 8323775 ~ 8325576 (+) True LOC120572387
XM_039821686.1 mRNA downstream 711 8497257 ~ 8502220 (+) True LOC120572388
XM_039821687.1 mRNA downstream 4397 8500943 ~ 8502220 (+) False LOC120572388
XM_039823340.1 mRNA downstream 73532 8570078 ~ 8571491 (+) True LOC120573551
XM_039821645.1 mRNA downstream 110419 8606965 ~ 8611199 (+) True LOC120572362
XM_039821705.1 mRNA downstream 117744 8614290 ~ 8616191 (+) True LOC120572401
unassigned_transcript_686 other upstream 39606 8412681 ~ 8413334 (+) True LOC120573548
TU191556 other upstream 39703 8412679 ~ 8413237 (+) False LOC120573548
XR_005641421.1 other upstream 455232 7990198 ~ 7997708 (+) False LOC120572330
XR_005641422.1 other upstream 455233 7990198 ~ 7997707 (+) False LOC120572330
TU191297 other upstream 731303 7718020 ~ 7721637 (+) False LOC120573538
TU192067 other downstream 2022083 10518629 ~ 10519736 (+) False tmem88b
XR_005641749.1 other downstream 2204639 10701185 ~ 10702028 (+) False LOC120573689
unassigned_transcript_690 other downstream 2543899 11040445 ~ 11040526 (+) True trnal-aag_7
XR_005641761.1 other downstream 2574897 11071443 ~ 11071506 (+) True LOC120573720
XR_005641763.1 other downstream 2575124 11071670 ~ 11071739 (+) True LOC120573722

Expression Profile