RNA id: TCONS_00072099


Basic Information

Item Value
RNA id TCONS_00072099
length 2304
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id XLOC_035353
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 1210300 ~ 1212899 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTTACTCTAGATCAAATGAATGCAGGTTCGGTGAccagaaaagaaataaaaacataaaaaatggtACTAGTCTTAACTGTTTTGACCGGTGTACTGTTTCATGTTACACATtttataacttattaaaataaagcaaaccTGAGGACCAAGCAGGATTTATATCATTTATTGAAGACTTGAAGTGCTAACACTATGATGAAAAAGCCCGCTTACACATGTACAAAGTCGAACAGAAGATCTCCAAATAAAACACTTGATTACATTCTGTTGTCGCGGCTAAACATTGATCTTCTCCAACAATTCAGGGgggaaatatattattttcagcTATAAAATGGACATAAAAACTCGACGCCACGCAGAAACATCCCCGACCTCGTCAGAAACGCACCTTTCCAGTTTTTGAGGCCGAATTAATTCTTGATGCAAATTGAACAATGAACAGAATGTAGTGTTACGAATGATGAACTGGTGAAACAAGTGCCGTCGAGATCCATCCAGACTCTTTTTCCATCACTTCTCTTTGGAAATAAGAGCTACTGAAGTGAGAGATTAATATGGTAAGTGCTTCAGTTTATCAGCTTTCCACTGTCAATCTATACACTACTACATAGAGTCGTCTGAAGTACTGAATTTGGTACTAACCAATACTGAAACTGTAAAAATGGGACACTACCAGATTTCATGCTGGCATTTTGAGTggattcttaaagggacagtacatgcaaaacatttaaatgtcattgtTTACAGTCACTAGCCAATCAAAGAGgtgtttaaagggacagtacatcaaaaaatattaaaatgacgtcatcatttactgtcactttagccaatcagaggtgtttaaagagacagtgcaaacaaaatattaaaaattatgtcAATTTACTGTCATTGTTGCCAATCAGAAGGATTTAAAAGGGACCGTACACCAAAAATGAAACTAGTCATCATTTACCCTCAGTGGTGCCAGTCATGTGACAATAAAACAGCCATTTAGAGGTGTTTAAAGGAACAGTgcatacaaaaaaatgtaaatttaccatCACTGTAGCCATTCAAAGgggtttaaagggacagtacaccaaaaaatgaaaatcatgtcATCGATTACTGTCACTGTAGACAACCAGTCATGTGACCACACAACAGCCAAtaaaaggcatttaaaaaaaaacagtacaccaTAAAAGAATTGAATGATGATGTAATTgatgatgtcatcatttactgtcaCTGTAGCCAATCAGGTGTCTTAAAGGACAGAAcaccaaataaaatgaatattctgtcaccatttactctcaTTGGTGCCAATAAGTCACATGGCAATAAAACAGGCAATCAGAGgtgtttaaagggacagtacacaaaaaaatacaatcttgtcatcatttactgttaTTGTAGACAATTAGGGgcgtttaaagggacagtacacaaACAAATCTGTCACCATTTGTCATTGAAGCCAATCAGATAGTACACCCAAACATTTTAATTCTACAATCATTTTCACCTTCAGGTTGTTTTAAACTCTTTGTTCTGGATGggaaaaaataagatatttggtGGAATGTCAGTAAACAACCAGATCTCGCTACCTATTTAGTATCACGGCAGGAAAAATAAGTATGGCAGTAAATGTGTCCGTATGGATACTGACATTCTCCCAAGTATTTCCTTCATCttcaacaaaacaaagaaattatacgagttaaaaatgtttacttgGAGAGTAACTGaagacagaattgtcatttttatgtgtactgtcactttaaaaattCCTGATTGTGCACTGTATTCCAATGCTCAACACAAATGACCGTGGTTGGCTATACTGACTTCAgtgcagccaatcacagtcatttctgcagAGCATATAAACACACCAGCCAATCAGCGACGCTTTAAACATCCACtcaaaatatttagaaatgttcaGTATTGATTACTACCTATATCAGTCCTTTTCAACAACACTACTACTACACACGCGTGTACCCTTAAGAGATGCCTTTTAAAGCTGGTTAGTTTGATTGCAAAGCCTGAGTCCTACAGccgccagcaggtggcgctcaacACTGCtttaaatagaataaatacaTGATTAAACACGAGCGAGTGATGGAAGCGCCGGGACTAATGCGGGTGTCTGCGTAGGGAAAGCAAAAGCGGGTCTCCTGCTAGTCATAAGTCTTCTCACacacgtacaaacacacacacacacacacacacacacatacgaacACTAAAATCCACACACAAATCCACCCACAAtccccaaacacac

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072096 lncRNA upstream 47075 1158751 ~ 1163241 (+) True XLOC_035350
TCONS_00072095 lncRNA upstream 230488 944232 ~ 979828 (+) True XLOC_035343
TCONS_00069416 lncRNA upstream 236546 944232 ~ 973770 (+) False XLOC_035343
TCONS_00069405 lncRNA upstream 795721 412312 ~ 414595 (+) True XLOC_035334
TCONS_00072094 lncRNA upstream 837224 371038 ~ 373092 (+) True XLOC_035332
TCONS_00071895 lncRNA downstream 7701 1220600 ~ 1222636 (+) False XLOC_035354
TCONS_00072107 lncRNA downstream 7701 1220600 ~ 1227069 (+) False XLOC_035354
TCONS_00069428 lncRNA downstream 8982 1221881 ~ 1227069 (+) True XLOC_035354
TCONS_00072108 lncRNA downstream 55054 1267953 ~ 1268972 (+) False XLOC_035355
TCONS_00072109 lncRNA downstream 55145 1268044 ~ 1268972 (+) True XLOC_035355
TCONS_00069425 mRNA upstream 3513 1187928 ~ 1206803 (+) False XLOC_035352
TCONS_00069426 mRNA upstream 5516 1189798 ~ 1204800 (+) False XLOC_035352
TCONS_00069424 mRNA upstream 26368 1170015 ~ 1183948 (+) True XLOC_035351
TCONS_00069423 mRNA upstream 26370 1170015 ~ 1183946 (+) False XLOC_035351
TCONS_00069422 mRNA upstream 52936 1148876 ~ 1157380 (+) True XLOC_035349
TCONS_00069429 mRNA downstream 71885 1284784 ~ 1298932 (+) False XLOC_035356
TCONS_00069430 mRNA downstream 78831 1291730 ~ 1304505 (+) True XLOC_035356
TCONS_00069431 mRNA downstream 220748 1433647 ~ 1446207 (+) True XLOC_035357
TCONS_00069432 mRNA downstream 438922 1651821 ~ 1680400 (+) False XLOC_035358
TCONS_00069433 mRNA downstream 438984 1651883 ~ 1682945 (+) True XLOC_035358
TCONS_00069427 other upstream 3356 1205930 ~ 1206960 (+) True XLOC_035352
TCONS_00069406 other upstream 772090 438111 ~ 438226 (+) True XLOC_035335
TCONS_00069399 other upstream 1199992 10216 ~ 10324 (+) True XLOC_035324
TCONS_00069435 other downstream 555006 1767905 ~ 1768021 (+) True XLOC_035360
TCONS_00069440 other downstream 713279 1926178 ~ 1930239 (+) False XLOC_035362
TCONS_00069441 other downstream 713310 1926209 ~ 1927981 (+) False XLOC_035362
TCONS_00069443 other downstream 766924 1979823 ~ 1979937 (+) True XLOC_035363
TCONS_00069468 other downstream 1587280 2800179 ~ 2806542 (+) True XLOC_035379