RNA id: TCONS_00006802


Basic Information

Item Value
RNA id TCONS_00006802
length 580
RNA type processed_transcript
GC content 0.41
exon number 6
gene id XLOC_003469
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25296366 ~ 25311677 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGGTCTGTTACACAACTGTGTCTTTCTTCATTCTGCCCACAGCTCCTCGCCGGCATTTTATATTAACAGGCTTTTAACtgtgttattttaaaaacaagaccCATAAAAATGAGTGGGGACCATTCCCACAACGATTCCCAGATTCTCACAAACACAAAGATAAATACAAGGACAAAGAACACAAACACAAGGACCACAAGAAAGACAAAGAACGTGAGAAATCAAAGTACAGCAACAGCGAACACAGGGACTCCTCGGAAAAAAAGCACAGAGATAAAGATAAAGAGAGGCAGAAGCTCAAAGATGGATCTTCAGACAAGCAGAAGGACAAACACAAAGAGAAGAGAAAGGAGGAAAGGTCTTCTGATGACAGGCCTAAAAAAGAGAAACAGAATGGATTCGCAAGCCCTCACATTAAATCTGAACCTGACAGCGATGACTTCTATCACTCTCCTAAACTAGAGAAGTCTCTGAAGAGAGAGCGGGATGATGACGATGGTGATTACAAGCCCAAGAAAATTAAAACTGAGGATGACAGAAGTGAAAAGAAAGCAAAGAAACGGAAACAGGAGGAAGAG

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0007059 chromosome segregation biological_process
GO:0006260 DNA replication biological_process
GO:0006265 DNA topological change biological_process
GO:0031298 replication fork protection complex cellular_component
GO:0005694 chromosome cellular_component
GO:0005730 nucleolus cellular_component
GO:0003916 DNA topoisomerase activity molecular_function
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0016853 isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060616-217 Predicted to enable DNA topoisomerase type I (single strand cut, ATP-independent) activity. Predicted to be involved in DNA replication; chromosome organization; and chromosome segregation. Predicted to be located in chromosome. Predicted to be active in nucleolus. Orthologous to human TOP1 (DNA topoisomerase I).

Ensembl:

ensembl_id ENSDART00000122249

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008402 lncRNA upstream 37379 25256812 ~ 25258997 (+) False XLOC_003467
TCONS_00008615 lncRNA upstream 37379 25257132 ~ 25258997 (+) False XLOC_003467
TCONS_00008613 lncRNA upstream 68181 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA upstream 68181 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006796 lncRNA upstream 69450 25212540 ~ 25226926 (+) True XLOC_003466
TCONS_00006816 lncRNA downstream 178550 25481107 ~ 25482237 (+) False XLOC_003476
TCONS_00006818 lncRNA downstream 178558 25481115 ~ 25482237 (+) True XLOC_003476
TCONS_00006823 lncRNA downstream 245297 25547854 ~ 25548546 (+) True XLOC_003479
TCONS_00008616 lncRNA downstream 526813 25829370 ~ 25830337 (+) True XLOC_003487
TCONS_00008617 lncRNA downstream 885960 26188517 ~ 26196145 (+) True XLOC_003489
TCONS_00006799 mRNA upstream 4667 25276748 ~ 25291709 (+) False XLOC_003468
TCONS_00006800 mRNA upstream 7199 25278772 ~ 25289177 (+) True XLOC_003468
TCONS_00006798 mRNA upstream 30141 25259058 ~ 25266235 (+) True XLOC_003467
TCONS_00006797 mRNA upstream 30352 25257022 ~ 25266024 (+) False XLOC_003467
TCONS_00006795 mRNA upstream 116046 25157374 ~ 25180330 (+) True XLOC_003465
TCONS_00006803 mRNA downstream 1282 25303839 ~ 25310706 (+) True XLOC_003469
TCONS_00006804 mRNA downstream 25642 25328199 ~ 25331325 (+) False XLOC_003470
TCONS_00006805 mRNA downstream 25645 25328202 ~ 25336921 (+) True XLOC_003470
TCONS_00006806 mRNA downstream 86190 25388747 ~ 25397129 (+) False XLOC_003471
TCONS_00006807 mRNA downstream 86236 25388793 ~ 25395877 (+) True XLOC_003471
TCONS_00006788 other upstream 168514 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006785 other upstream 255739 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006784 other upstream 265130 25010538 ~ 25031246 (+) False XLOC_003461
TCONS_00006782 other upstream 270784 25009643 ~ 25025592 (+) False XLOC_003461
TCONS_00006781 other upstream 270879 24994733 ~ 25025497 (+) False XLOC_003461
TCONS_00006814 other downstream 175186 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006817 other downstream 178550 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006838 other downstream 775390 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006853 other downstream 1302054 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006865 other downstream 2217899 27520456 ~ 27520573 (+) True XLOC_003503

Expression Profile

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