RNA id: XM_039823133.1


Basic Information

Item Value
RNA id XM_039823133.1
length 10084
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC120573414
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 11910451 ~ 11935773 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGAGCGTCTCCCTTCATTTGTGTAGCTGCAGCATGTGAAATTCTTGGTTGGCTCTCCTGCGCTGTCGGTGACGCGCGCACACGTGCACATACGCACACTCGTAGCAGAGCATCATAGAAGGAGAAGCAGCGGCAGCGAAAAGCGGTTTGGAGGGGAGGGCGACGGGCTTCGACTTTGGATGCTTAGTCACATCTTGCCTTGCCCTGAGAGGCGAGGGATGGAGCGGGTAGAAGAGAAACACTGAGCGGGTCAGCGGGAGAAGAAGATACGGAAGAAAGCAGGGGCTGCCGCTAAATCTGGAGTAGATGATGCTTATTTGCCGCAGGCCCCGCCATCGTGAAATTGGATACCGACTTGCGGCGGATGGGGTGACCGAGCTTGCTGCTCCGCCGGGGAGGTCCCTGCCTTCGGACGTTACCGGGGTGGGAGCTGCCTGTGCCCGGTTCTAAGGAAGGAAGGATTGGCAAGCGGGAAAATGCAGACGGAGGAGGAGACGGCCACCGCAGAAGAGCCCATTTTGGACGAAGGGTCAGGACGAGACCAGCAACGGCCAGTCCAACAGTCTCTGGGCTCCTCCCTGTGTCGGGAGTCCCATTGGAAGTGCCTCCTCCTGACCCTCCTCATGTACGGCTGCTTTGCCACGCTCGCCTGGTGCGCTCTCTGTCGCGTATCCGTTCTCAGCTCTTCCATACCTCACGGTGCTGACGGCGATGCCACCTCGGCGGCCTACTATAATGACATCCTGCACCTGGAGAGTCCGTGCTCTAGCGGCTACGTCTACATCCCGCTGGCCTTCCTGGCAATGCTGTATGTGGTTTATTTGGTGGAGTGTTGGCACTGCTTCTCCAAGACGGCAATGCTGGCTCATGCTGAATTCCAGGAAGTGTATGAGCGTGTGCAGAGACTTCAGCAGGCCACACCCTGCATTTGGTGGAAGGCCATCAGCTATCACTACGTGAGGAGGACCCGACAGGTGACAAGATACCGCAACGGAGATGCATATACCACCACACAGGTCTACCATGAGCGGGTGAACACTCATGCTTCCAGTTCAGAGTTTGACTACGCCCGCTATGGTGTCAAAGACGTGTCGAAGGAGCTGCTGGACCTGCAACTGCACCCTGCTGTTCGCCTCCGTTTCACCAAGTGTTTCAGCTTCTCCAGTGCACGTGCTGAAGCTGCCTACCTCACCCagCGAGCGCGCTTCTTCGGAGAGAACGAGGGGCTTGACGACTACATGGAGGCCAGAGAGGGGATGCACCTGAAGAACGTAGATTTCCGTGAACACATCCTGGCGTTCCCAGATCCTGCCCACCAGCCCTGGTTTTCTCGGCACAGGGTCTTCTGGCTGGCTTCTGCTTTCCTCCTGTCATGGCCGCTGCGGGTTGTGTCCGAATATCGCACAGCGTACGTACACTACCATGTGGAGAAGCTGTTTGGGGAGGACGAGGACGGCggcggaggaggaggtggcGGAGGAGGACGAGGGGACGGGGTTGAAGGAGGGACAGAGAATGGAATCCACCCTGGGATTGGTCTAAATGGGAGTTACAGAGCCATCTCTCGCGTCAACACGGTGGACATGACCGAATTGGAGTGGCACATCCGCTGTAACCAACAGATGGTCCCGAGCTACTCCGAAGCCCTCCTTATGGACTTGGACATGAGCGTGGGGACTAACCCTACCGCGTCTACGCCCATCTCTGGGGCTACGAGCTCCACCCCCAGCCAGGGCACTAACCCTCCTCCTCTAGCTCTGCCTGTTGTCTTTAACTCGGCTTACCTCCTCCAGAGCTGCCCCCGATGCCGGAGGACCACGTCCAGTTCCAGTCTTCCCTCCAGGCTAAGGGCCCCCATGGGAACCACAGCCCTCCTGAACGCTACCGTGGCGGGGATCAGGGCAGTGGGGCAGGGGGGTGGGGGTATAGGAGGAAGGCTGGTGCTCAGTCGGAGCGGATTCTCTCTGGGGAGACTGGGAGGAGTGCGccagaacagcctttttcattcGAGAAGCATGGGAGGAGGGCTGGGAGGAAGTAGGgaagatggaggaggaagcggaggtgggggaggaggagggggaggtagcggaggaggaggtggagggttCCTAGGGTTAGGTTCAAGACAGGACAACGAGGAGACCAGAGGAGTGCTAGAaggagaaggggaggaggaagaggaggaagaggagcagcagcagcagcagcaggaggaggtgaCGAGGAGGGAACAGGgaagaggaggcagagagagggacGAAGAAGCAGAGCAAGACAGTTTAGGGTTAGGCGAGGTGAGGGAGGGCGACGGGGGAGGGAGGGAACGTCCTCCGTCCTACCAGGACGCATTCTTCTTCCCCGTCCTCATCATACACGGAGAGGAGAGCTGCCACGCTGGAGACGACATGTGACGGTCAAAAGAGTAAACGCTCCGCAAGCGAGAACGTCGGGGCAGAGGCCGAGGGAGATGAAAGAAGACGCCAAACACACAGAACAGGTTGGATCAGAGAGGAAGTGGATGAGTCCAAATAGATAGAATAGGCCTGAACGATGATATACCAACCACAGAAAAGAAGAGAGGATTCAGTCAGAACAAAGCATAAGAGGTAAGAACAGTTTTGTGACCGACAGAATTACCAAGTAAAGAGGGGGATGATGGAGTCAAAAGGGAAAAGAGAATGTGCTGTAAGAGGAGAGGAGTGCATACCGTAAAAAGCCAGGAAACCCACTGGTTCAGAAGGAGATGAGGGCCGATAGGGagtacagcagcaaaataataTGGAGTCTGAAAATATGACACTTGTAGACCTTGCTACACAGAGCTCGCAAGAGAGAGGGGGACCAATCCAATACTTAGGAGGAACAGAAAGACTGAAAACATGGGAATGACTATTTCCAGATATATCTATGCAAGAACAGGAGTGGGAGGAGTGTCAAGTGTAAAGATAGCAGATTGGAGCGCAGCGGAGAGACTCCAAACCAGCTGAGTGgggtttttttctcaaaagaaACAGAAGTGGAGGATTTTGCAGAAGAGTATTTTGAAGGCTTGATGCTTTGGTTTTGCTAAAATCTAAAATGCCTAGTGGAGGACTAAAAGATATGGCTCATTAAAAAAGATGAAATGCAGGAAGAGGAACTCCTAAATATTTCAGACAAGGGAAGAAACCAATGAGATCACAAAGAATTACAAGATGCGATGTAGAGAGGTAGAGGGGGAGAAATAATGACACGCTTTTGGCAATGTGGAAAAATGGCAAGGGAGGAGAGTGTAAGTGTCAGAGCACAGCATAGAAACAATAGACAAAGGGAAGAAGTAGAATACAAAACTCATCATGACAGACCAGATTACCCTAAATCCTGTTTTCCACTTGACAGATAATTCATGTAGgttcctttttaaaagaaatcaaaacagagttatcaaaaagatCAActcaagaggaggagggggaaaaaaagaagatacaGGATTTTATCACAGAGACAAAATACCATCTGAACAGCAATCATGACCTTAAATCTAATCAGGGAATCAAATTCAAATTTTCTAACCGGTCCCAATAACAAATGACGTCTTTCTCAGGTCTTTTAAAATTGACTATACACACACTtaaggattgggcatcgagaaccggttccaacttggaatcgtttcaaaaattgaGATTCCATTGGATGgtttttttattggaatcgtttgctAAATTTGGTTTCGAATACGATCATCGGTAAAAAAAATGAACccaccctttttttcttttacttccaGGCGCTtggttgtgttgcagccatggagcacagtaagcgccgctctaaagtgtggctttGTTATACATTGAAAAAAACAGGTAAATCACTGTTGAATCAAAATGAAATGTTCCTCTTATCGGTGATATAAGCatgagaaccggaatcgaaagggaGAATCGGCATTGGGATCAGAATTGTTAGAATTAAAACGACGCCCAACCCTATACACACTTCATCTGGCCATCAACCGTTAACAGTATAATAAACATTgatttcctccctcctcttcatgCTGTCTTACTACTCCCTTCACATTAGCGTACGCACCACTCTATCCATTACTGATATGGAGCTGATAGAAAATAACTCCATAAAGGAGCGATTGCTTCCTCtacctctcctcttttctcatGCTCCTCTCGCCAATTTGTCACCTCTTCTGTTCTCCTTCCTCCACCCTCACCCCTCCGTGCACTGAAGTTACAGGTGCAGAGGTGTAATTCGGAGCAACACAtctattgctttttaaaaacacGACTAGTtagtaggcctgtaacaattattacataattgtctagtTGTCGATCTTTTTACTTAATCGCGCATTCTTTGTTTAACCgtaattaattgctaacattagctaaggtcttacGGGCTAAGcctgttgatggtaattgttgattttgtttagatatgccaaattgtaattatataactAATTATTGCTCGGGCTGTTGAGCTAAAGCAatgttagttgttggcacttgatcCTCCCTATGTATATACAggttcatagcaacaaaaatgacaagggggaatacagttagaaaaactgttttatgataataaagaggcataGTTTACTTCCTAGGCTGTGTACTTTGTCTGGGTCACATAGCAGTGTCCCCCCAtcctaaataaatatattaaaatttgACTGAGAGACACTTGTATTGTTAATCGCagttatttctgagacaattaattgtacggcaaaatttggaattgttattGCTCTACTAGTTAGGTGCAACATCTTTTGCAATTAGCACGTGTTATAAGTGACGTGAGAGGCTGTTGTACCAAAATAGATTCACTGCACCCATCATTAACTTCTCCGTCCTCTATTGCTCTGCCATCTTCTCTCTTCCGCTCCtccctttcctcttttttttttttaaagtggtggTTATGTGATGCGCctctctctgctcagatcacATTTCATCTCCGCTCACTCCGCATATCACATCGCTTCTAGGCGCAGGTTTCTCCTCAAAGATCAGATTTTATGAACCAGATATTACCtactcattttttttatgacctCTCGCTATGTCTGTATATTGTCAAAGAAACAGAATGAGCAAATAATGTGGGTGCTTTGATCAGTGGATTTACCCAATGCGTAGAGGAGCAAAAGATAGACAAATCGGACCTTTAAAGACATTGAAAGGTTGCTAACACAGTAACATGTTTAGCTATTTTCCACCAGTTATGCCTGTGTAGTTGTGCTCTAGTTTTAAACGTTTGTACCCAAAGATAGGCTGGCGCAatataaagggaaaaaaattacaataacCAGTAAACCTTCCTCAAATATGAATATACTATATATCTCATTACTCTATGTCTTCAGGCATGAAAAATCACCTCTTTATCTCATTTATGTCCATAATATTGGACTGCATGGGAAGTAAAACTTGAGCTGTCAAGCTCAGCTGGCATTCTCctgataaaaataaagaatacatCAGACTTTTGCtttacaatattaaaataaaagcaacaaaatgatCACAATGATCAATAACGCCCAGCCCTGTGGTAGACCAAGTCTGGCCACATTGTGCCATACTGCTACCTCCTCTTGAAGAATCACCTGCAAATAAGTACCAGTGCTCTCTGAAACATCGCCTCACtataaaatgtgtaaaaggTAGCTGGCATAGAGATGCATGTAACTTAATAACAGCTATTGTGCAGGAGCTACTAATTTAGACATTTTAGACACACGTTGGCAAGGGCACAGACAAGAATCCATAAGGATTCATAGGACTCTCTGTCCTACTTTGTGAGTTGGTATGTTTTTGTGGAGGATCAGTCCAGGGAGAGACAACACAACCATCAGTGCATATATTTtacaaagcacacaaaccctGCTACAGTAGCAAGAAGCAGTTTTGAGTAGTTAGCCGAATACTTTCTTAACCTTTCCTGCATAGTGAGAACGGTCACTTCAGCCACTTCAGTGATGTTGGAAGGGTCTCCCTCGTTCTCTATCTGCTTATTTCGGACACAATACTGAGAAGCACACTTAAATAATGAAGTTAGAGAGAAATCTAAACCAAGAGGAGTTTCCTGAAAATAGAGCAAAAATTATACTTGAAACACTTCATAAATGATAGAGATAATAATGGACATGGTAATCAGCGTGCACTCAAATACGGATACTGTAACTCCAAACATCCAACCTGgattcagcagaggcagcagGGAACGTTCTTTCAATGAAACTTTCTGAAGGGACAAAGTAGAGCACGAGTGCTGACCTGGTTTGGTGtacaggacacacacgcacacactctgacacacattcacacacgcCGATTCTGGCTCGCGGATCTTCTGTAGCTTTGGGGGACATCAAGCTGAAGTGGGCACAAGGAAATGAATGGACGGAAATAATTAACGGAAGAAAAGTGACGGAGAAAATGAACAGCAACATGGACAGGTGTTTCTGTGGGAACTGGACAaatgacaaagaagaagaaaatgtgaGATTAAAAGACAATTCTTTTTTACAGCTATTTATCATCTCAGTCTCTTGACTTGTGGATAAAATTGTCTCCATTCATGTCCCTTCATGAGAAAAAGAAGCACTGACCACACTTCTGCGTTAATTTGATTGAGTTGCTTTCCCAAATTTTCAATCGCTCACTTTGTTATTtctatgtatttttttgttcatATCGCCAGTCAGCCACTTAAATTTGAAATCACATGTAGTGAGctctaatttaaaatgtaaatgcttTGTCACCAAAAGTGACAAACCAAGGAAACACAATTCAGTCTGTAATTTGCTACTTTTATATCATCTGCATACTTGAGTAGCCATTATTTCaggttgttattattattattattattatttttattattattattattatttcaaatgcCTTTGTAAGCTTCAGAAATTTCTCATGTCTTAGCTgctattgtttttttgtatttttttgtattttctttttgtaaaacaGACAACGCTCTTGGCTTCCCAATGAGCTTTTATTGGCGAGCCTCTGGTTCTAATTTGCGTAGGGTGCTTGGACCCAGTTCTACTTGCTTGCAAgtatagtttattttatttattttttattttaaatagacAAGTGTATTTCACTCATATGTGTTGGTACTGGATATTTATACTGTGTTTTATTATCTCAGAGTGTGTCAAAAGCGTGTCCTCAGCCGCTTCAGGTGTGCCAAGAGAACTTTGTGCCCATgatgtcttacacacacacacaaacacacactcacttactCATGCGTGCTTGCATGTTTAGCCACAGCGGTAAAGCAGCCATTATAAACAGCTTCTTTTAGACTAGAGTGACATTCATCCAATACCCATAATAGCCTAACACATGCAGATTTTTAACATgaccatgcacacacaaactaaaAGCATGGAACTGTCCTGCTATGTTGCCTTCGTGTCCGACGTTGCCAACCTTTTTGCTCAGGATTTCAGTTTTTGCTGCATTCCTGCTTCAACACGAGCTGTCTTTGACACAAACATCCGTCATGCCAAAGCAAGAAGCATCACAGAGAAAATGCCTGAgcttacacacacattcacgtaGACAATTAGCAGCTGGTACAGGTGGTCTACACAATGTGCAATAGTACAATTTGTGCTGGTGGACTGCTCCAGCACCAAACATTTACACGGGGTGACAAAAGGGTGGGTTTACTCAGGAGCAGAAATAACAGATGCCTGTCAAGTGACCTTTATCGGCAAAATGCACAGGTGCGGCTCATGTAAATCCACCCAGAATGTGtcttttacattgtggtatgTTTGGCTAAACCCCGCAGGCTGTGTTTTTGCCCACTAGGTGGCAGCAATGCCTTATATATTGTGACAACACAGATGTGATGTACTGTATTCAGAGGGTAAACAAACAGTGAATTGAACAGGGTAGAAAACAGCTGCTGTCCTGCTCTCCGTGGGTTCCACATCTGCACACACCCCAGTCAGTTATCTCAGACAAGGTACGTTGTCTTCAGCAGCTGATGAAGAGCCCCTGCTACGACATCACTGATAGAGGTCTGGGCAGAGGTGCAACAAACCCAAAAGTTACAACCTGTGGAAAGCAGTGCAGTTGTGTATGTTATTGTGCATTTATCTTCATTGATCTTATGATTTTCCTTTACCTGTAACTGAATGTGTTGCCAAGCAATATTGCCCACATCCCTGCTTTGTGGCTGGACTTATAGATGTTGCTAAGCAGCTTTCTGAACTTATAACCACAACCAATGGGTGCTTCAGTCATTGAAATGACAGCACTGTTAGATTAAGGCAATTTTGTGACCGAGCCTCCATTTCCACTGCGTAACTCATTATCTGGCTGTGTTGCTCTATATGACACAAACTACAAACTGATAGAAAGGAACAGGGTTTGGTCTGTAATGAACATGCTCTATCTTGAAAAGACCACTCTAAAATACACATCTGTTTACTTGTGCCCACATCCAGTTTGATTGTTCTGCTCTCATtttccactctttttttttttttttttatcaacatcaTCACGTGACGATCTTATGAAATGCTCTAGCTATTATGACCGATGTATTGTTGTCAATACTGTTACTGTTTCTCTTGTGATCATGGGAGGAGTGGAGTAGTCATAACAAGTTTGtcaaacactgtaaaaaaagaagaaaaaaaacatgtttagaaTTGGTTTGACTTGAAATCACATGAATTccagctgcatttttttttttttttgatttccaGAAGTACTTGGGTTAGTCTAATGTGGATACTACAAACTATCAGGTAACAAATAGAAACGTGTGATCCAGTGACTGTTTCACACAGTTATTCTAATTTATACATAAGTCAAAGAAATTGACCAAAAACAGAATCCAGGGTATTCTTTTGACCTCAGACACTTTAATATGAATTTGTGTGCATTAACAAGTCTCCCTCAGAACTATaaacagcagctaatattactgTCTGTTATTATCCACAGACATGTTAAATGCTGCTCTTTTAATAATGCATAGTAGCAGTTTCCCATTGTGCAAAAACTGTATTGTAGCTATACTGAGCCTTGTATGATACACTTACCACCGCCCTTTGTTTTTGCACTGAAATAATGAGCAGCTGTGTGTTGCCGCGTATCCTTGATGCAACATGACATGATGACTGTATGTAAAAACTCACAACATTCTATATGACTGTAATGTGTCAGAAAGAACTCTTAAGTTTAGGGCAATACATTAGCGTCAGTATAATAAGCCTACTGATATTCAGTGTCTGGGTCAAGGCTTATTTTATGATCCGGGTCAGAGTCgctgttgatttaaaaaaaaaataatatatatatatatatatatatataaaaataaagaacaaaaaaattgtgGAGATGAGATCAAGTAACGCCTTTGCTTAAATATGTGCTGTGTCGCCTGATTGTTAGAGTATCACCATTGGACAGTAAAGCTATAAAAAGCTATATCCATGTTAAAACCTCGCGTCCACAAAGTGTGACTTGGCTTGTCAACGCAGCGGGAGCCCTGGCTCTCTCAGTTCCAGAGATGATCACGTCACATTGACATTTCAGGATACTCGTTTTCTTTCCTGCTAAATATTTAATGCTGCTGGATTACCTGTGAGCTGTCAAACACATGGAACTGTTACCACAATGTAGTTGTTATGTACATGCAGCCTATGGGGACAATAATGTCACATACAATGCATTATTGTCTCTTACACAGCGATGTGTAAAGCCAGGAATGGGCTTTCTGTTCAAGCACCGTCGAGCAAAATGTCCTCAGTATTTAAGCTAATTAATATGTAACTGATAATGAGATTGTCAATATCACACCAGATTATAGCTGTTGTCACTGGCCTgtttaagataatgtaattatttcatTTGAGTGGATAATGACAGTGAAGGTAAAGGAGCTGGTGGCAATAACACTGTTAACTGATGCGGTCCTGGCGATGATGATGACGATTCATTATCATGGAAGATACAAATAAAGTCAATCTGCTTGGTATACCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192619 lncRNA downstream 54097 11842267 ~ 11856354 (-) True G142790
TU192594 lncRNA downstream 347519 11553786 ~ 11562932 (-) True G142766
TU192581 lncRNA downstream 370933 11490414 ~ 11539518 (-) False G142758
TU192580 lncRNA downstream 414713 11490414 ~ 11495738 (-) True G142758
TU192570 lncRNA downstream 453681 11455016 ~ 11456770 (-) False prox3
XR_005641728.1 lncRNA upstream 50058 11985829 ~ 11986624 (-) True LOC120573458
TU192693 lncRNA upstream 287502 12223273 ~ 12224139 (-) True G142846
TU192686 lncRNA upstream 335064 12270835 ~ 12275611 (-) True G142839
TU192719 lncRNA upstream 345962 12281733 ~ 12287351 (-) True G142868
TU192717 lncRNA upstream 348673 12284444 ~ 12287351 (-) False G142868
XM_039823246.1 mRNA downstream 150592 11724497 ~ 11759859 (-) True LOC120573491
XM_039822860.1 mRNA downstream 428845 11474794 ~ 11481606 (-) True snx15
XM_039822859.1 mRNA downstream 443432 11455015 ~ 11467019 (-) True prox3
XM_039822733.1 mRNA downstream 457574 11445612 ~ 11452877 (-) True tmem179ba
XM_039822729.1 mRNA downstream 522654 11332356 ~ 11387797 (-) True plcb3
XM_039823317.1 mRNA upstream 839 11936610 ~ 11967772 (-) False spag17
XM_039823318.1 mRNA upstream 839 11936610 ~ 11967121 (-) False spag17
XM_039823319.1 mRNA upstream 839 11936610 ~ 11967121 (-) False spag17
XM_039823314.1 mRNA upstream 839 11936610 ~ 11967121 (-) True spag17
XM_039823316.1 mRNA upstream 839 11936610 ~ 11963423 (-) False spag17
unassigned_transcript_696 other downstream 425895 11484485 ~ 11484556 (-) True trnam-cau_43
unassigned_transcript_695 other downstream 432253 11478117 ~ 11478198 (-) True trnal-aag_9
unassigned_transcript_694 other downstream 435108 11475262 ~ 11475343 (-) True trnal-aag_8
TU192555 other downstream 466512 11441961 ~ 11443939 (-) False G142745
unassigned_transcript_697 other upstream 21558 11957329 ~ 11957399 (-) True trnag-gcc
XR_005641645.1 other upstream 59339 11995110 ~ 12063426 (-) True LOC120573137
unassigned_transcript_698 other upstream 475272 12411043 ~ 12411116 (-) True trnai-aau_26
TU192795 other upstream 477983 12413754 ~ 12415155 (-) True G142916
TU192812 other upstream 662982 12598753 ~ 12602618 (-) False rpl34

Expression Profile