RNA id: TU194329


Basic Information

Item Value
RNA id TU194329
length 2323
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G144013
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 17887278 ~ 17889652 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGGCAAACTATGGGTTCTAGGCTAAATGTGACACTGCTACAGGTGGCTTCTAATGTATCTGGATTTCTTTTACAGCAAATGACACCAAAGGTGCTTTTTTGTGGCCTCAACACTTTGCTGGTCACATGAAAAACCTGTGAATCCATTTTTGGTTGAGGGAATTTATATAATCTCATAAAGCCCTTTAAAAAGTCATTGGATGAGGTCTAAAATGCACAATGTTAATGAAAAGCTTTGGATTCACAAGGTTTCCACCCAACTATGATCATCTTTATTTTCAACCGTTTCAGAGACAAAATCAGAGACACATTAACACATTAAAACAAATGCCTCTGCtggcagaaaaaaacatcaatgcatatagcatttgaaaacacATTGGGAGTATCTTGCCATGGTAACACACTTAGGCCCTTTAGACACCTTAACAGCACCACAGTTGTGGAAATGAGCCCAATACGTTAACATGGTTGTTTTTATACTTATACTGACAGTTTCACAGTGCAGCAaccacaatatatatatatatatgatacacACCCTGCTAACTAAACAGTTAAATATgctttcttgtcttttttatttaaattgtatCAGTCCAAGGCATTTACTTTTTAAATCCCAGCAGATGGATTGTTTTTGTCTGATTTGAGGCTCATTTCTTTGAAGCCAGTCCAAAGAGTTTGTTGTGTGGCTGCATGCAAGTAGGTTTAGGTTCAACTGATTCCTTTACTTCTTAATTCCATCCATTAGTGCACACATAGCTTAAAAGTAAATGAAACATTGTAAATTACCAACATTATACATTACAACAGCTTTATAGCACTCATCTGGAAGACAAGGGGAGAGATGACTGACTCTTTGGTTGCTGTTATCATAGTTTATAATAATTTAAAGGGATAACTTACCATAAACTCGCTCCTTTCAACAGTCATACAGTACAATGAAACATACATCTTAGCATTGCAATGCATTaggtttttctgtttttttgtgcaaaaagaaaatatttcattTCTAGATGATTAATTGTGTGTTAAGACTTTCTCTAAAAAAACATATAGTTAAAATTTTTTCACAAGAGAGGTTAGGTTATCTGATCCATTTAACACCAAAATCAAAAATGCTCTGGGTCATACCATATCACAagggaaaaacacaaaacacagattttAGTGCCTCTTTTAAATGTATTGCGTATAGGCCCTATTCCAATACTTAAAACTGCATCCTTGACTTACTAAATAAAAACCCAATTGACTGTTTGCTAAACCCTTCTTTAAACAGGAACAAGGCCCAGCAGGTACATGTTGAAGCGATGTGCGTGAGGCTGTGGTAAGATACTTCGTACAGAGTTTTGTTTTAGCCgtaccaaaaccaaaaacaccaATGTAAGCTGCAAACATTAGCATACCTGGCTAACTAGCTTACTACCAGTAGTAACTGAGCATTATTTTAAAGCCAAGGAGCATATCATTAGTTAACTGCATTATTATGTTATTTTGTGTTAATACAAGTTCAATTGTGTGGGAGCCAAAATGCTGCTACGTCAGAGTTTAACATTAGCATTTCTATCCTGCTCATTATTGGATTTAGATTTTCGCTCCAGCAAATCTCATCAATTGATTTTTTGCCTGGACATATAGCGTAAGCCTCAGTCTTTTAGcattaaaatatgtatatagCCATCATGTGTACGTATATTTTACAGGACTCTGTTTAAAGCGAGTCAGCTGGGAAGCATCAAAAGTTGGCTaattagctaatgctagctaactGCATCTAATTAAATCTGccagttgtcatttcagccgACAAAACTGACAGTCATATGCTATAAATGAGAAGCCTGCTTTTGTTTACCTCCATGTGAAATAGATGGTATATTGTGGAATTGTAAAAAAATTgaattgttattactgtaaactgCATTTGTGCTGTGCTAGCTTGAAAAACTTGATAGGCGTAGTAACAGTAACTAAGGGCGGCAGGGCTTAACACACAGTCAATTATTTAAATAATCTGCCCTTTGTGAAATTGGCTTAACGATTGTCATTGTCAAGTTTTGGAATGGGGCCAATGAGTGGTGCTCTATCCCTGCTCTCTGTGACCGTATGGTTGTAAAGGTCATGCTGTCATGAGCCTAGTGTTGGCTTAGGGTTGGGCCAGGCGCTCCAGCGCCTCTCCATCGCAGCGCATACAGTGGTAGCCCATGTCAGCCGTGACGTCGAAGCTTCCCTGGCTGAGGTAAAAGTCCATAGATGGTTTGTTCCAGTTTAGGACGGTGAAGTTAAGCTGGCTGCAGCCAGCAGCCAGGCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194197 lncRNA downstream 33464 17852399 ~ 17853814 (-) False smim20
TU194173 lncRNA downstream 123573 17762380 ~ 17763705 (-) True G143898
XR_005641723.1 lncRNA downstream 202325 17682075 ~ 17684953 (-) False LOC120573415
XR_005641722.1 lncRNA downstream 202325 17682075 ~ 17684953 (-) False LOC120573415
XR_005641724.1 lncRNA downstream 202417 17682075 ~ 17684861 (-) True LOC120573415
TU194348 lncRNA upstream 84247 17973899 ~ 18060553 (-) False LOC120573700
XR_005641476.1 lncRNA upstream 102493 17992145 ~ 18002471 (-) True LOC120572704
TU194367 lncRNA upstream 126597 18016249 ~ 18019306 (-) True G144037
TU194570 lncRNA upstream 279641 18169293 ~ 18173021 (-) False mrpl52
XR_005641738.1 lncRNA upstream 358791 18248443 ~ 18250057 (-) True LOC120573605
XM_039823201.1 mRNA downstream 16592 17864831 ~ 17870686 (-) True si:dkey-19b23.8
XM_039823395.1 mRNA downstream 33441 17852371 ~ 17853837 (-) True smim20
XM_039822623.1 mRNA downstream 66200 17764186 ~ 17821078 (-) False rbpjb
XM_039822624.1 mRNA downstream 96922 17766290 ~ 17790356 (-) False rbpjb
XM_039822625.1 mRNA downstream 97186 17764186 ~ 17790092 (-) False rbpjb
XM_039823435.1 mRNA upstream 16448 17906100 ~ 17949655 (-) False chd3
XM_039823436.1 mRNA upstream 22336 17911988 ~ 17949657 (-) False chd3
XM_039823434.1 mRNA upstream 22336 17911988 ~ 17949657 (-) False chd3
XM_039823431.1 mRNA upstream 22336 17911988 ~ 17949657 (-) True chd3
XM_039823432.1 mRNA upstream 22336 17911988 ~ 17949656 (-) False chd3
XR_005641649.1 other downstream 66201 17766500 ~ 17821077 (-) False rbpjb
TU194183 other downstream 134289 17744954 ~ 17752989 (-) False tbc1d19
TU194121 other downstream 637724 17247951 ~ 17249554 (-) False LOC120572513
TU194122 other downstream 637724 17248088 ~ 17249554 (-) False LOC120572513
XR_005641408.1 other downstream 1843959 16019657 ~ 16043319 (-) True acap1
TU194343 other upstream 170540 18060192 ~ 18061155 (-) False LOC120573700
TU194399 other upstream 224200 18113852 ~ 18123690 (-) True G144058
TU194667 other upstream 705450 18595102 ~ 18597231 (-) True G144258
unassigned_transcript_702 other upstream 805047 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 806444 18696096 ~ 18696169 (-) True trnan-guu_12

Expression Profile