RNA id: XM_039823609.1


Basic Information

Item Value
RNA id XM_039823609.1
length 3895
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC120573700
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 17973899 ~ 18080804 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCCGGAACATAGATTGAAGTGCTGTTTTCGCTTGTAAATCGGTAGCGACACAAATaccattgtgattttttttgatACAATGTCCTAAACTGTcctcaacatactacactagtAATGTAGTGGAATTTTATTGAAGACACTGAATGGGGGTAGGTCGAAAACGAATATCCTGCGAATATCAAACCTGCTGCTAACTTATACCCGCTTTGTTCTGCTGTAAATTTATAAACTATTTCTACATGAGAAGTATATTTTTTCACAGCCATCCAGCCTTATAgagtttaattaaataaaatgacccGTCTACCATCATTATTAGCTACACTAGCTAACAAAACAGTATCAATGTGTACATCCTGTCCTCTGGCTGTTTATAACATTCAGTGTTGTTATTTTTGTGCTGCTCACACTTCCTTTGTGCAACTGTAGCCTATGCAGCTTGTTTCAAGGTTCAGTGGTAGGCCTACATAGATTTATATTAACTGCAGAATGTTAACAAGGCATCTTGTCTATAGCATAACTTGAGCGAGAGATAGACTCATGGCGGCCGGTGCAGCAGCACGGCGTGCTGTGGGAGAGTTTACGCGAGAGTTTACTCGAATTAAACCGGAGATTTACCACACTGAAGACGGTAGAGTCATAGTAGAGGATGAGTTGCTGAACTTTATTATGATCAAAATGCGAACACTAAGTCACGATGATATTGTGGCGATAGTAACGAGCAGCTTCAGCTCCGAGCGGATTGAGTCTTCAAAGGCAGTTTTGTCAGAACTCCTTCCACACAACAAACGGTGGATCTCCCATATGGGACCAAAGAAGGACATTAACAATGTCAAAATGTGCCTGCAAGCGCTAAATGAGTGCGGTGAAGAGACCCCCAAGATTCGTATCCTACTTCCTGGATGAATTACCCCCCGTCTCATTTAAACACATCGATGTGTCTGTGCTTCTCGGGAATATGCAGCAAATCAATGTTGACATTGACTACTTAAAAAGAACTATGGGAACTCAGGTAGCTGCCTGTGAAACATTGCGGGAGGTTTCTGTTAAACTCGACAGCCGGGTCTTCCCCCGACTGTGATGGAGAAGCCGCCGGGTCCTGATCCTGCCCCCCGCATTCCTTCTGGGGTTAATGGATGGTTGCCTGGCGGGACCGACAGCAGTCAACCAGCCCAGTCTGTAGACCCCCCCCCATGGAGCACGGTGGTAAAGGATGGGCGCCGACTGAAGCAGGTACGACTGAAGCAGGTACCTGAGAACCCTGCCCATCGAATCCTTACACCTCGTATTGCAAACACTTCAGCGAGCTATCTGCTCCAACAGGCTGAATCCATACATCTGAAAAAAACCTTCAGACATCTAAAAATGTCAACACTCTCATTGAATAGACATCAGTATGAATCATGACCTAGTGGAAATGTTCAGAGAGAAACTAGACAGCTTCACCATCTCAGATTACCATGGCCTGAACAGTCCAGGTCTGACATGCTATTTGAACAGCGTGGTTCAGGTGCTTTTCATGACCCAGGACTTCCGGGAGGCTGTGAAACGATGCAGTAAAGATTCAACAACCATTGACCCACAGCTGGGAAGACTTTTTGCTGATCTGCAGAGAAGTATGGCCGAAACGCATGACGTCATAAACAAACTGGGGATCACAAATGTATATGAGCAACGTGATGCTGCTGAATATTTTGAGAGGATCCTCTGTCAGACCAGTCCGGAGGCAGCCAAGATATTCAAGGGAGAGCTGAATCACAAGACCGAATGCCTCAAGTGCAAAGAGAGGAACGATTCCAGGAGCTCTTTTTGGTTTCTGCCACTTGTGGTGGAAGATTTGCACTGTCAAACTTACAGCGTGGAGGAAGGATTAAAAGCATTCTTCAAGGGAGAAAAAGTCTGCGGTGACAACAAGATGTTCTGCAACCAGTGCAATAAAAAGCGAGATGCAGACTTTGGATGTGAGATAACACACAATCCAGAGATTCTGACCCTCCTGCTGAAGAGATTTAACTTTGACTACAAGCGCAGGTGTTACGTCAAGCTTCACTGCAACGTGGACGTCCCCCAAACTTTACACATAAGGAATTGCAAATACGACCTCTACGCTATAATTAACCACTTTGGTAATCTAACTGGAGGCCATTATACTGCACATATCAAATCTTTTGAAACTCACGTGTGGTATGACTTCAATGACGACATTGTTAAGAGGGTCAAACAACCTTTAAGGTCTTATGCTTACCTCCTCATGTACAGGAAGGTGAGCAAAGATCCTGATAAAACTGATCAAGGCAACCAGGAGGCTCTCTGCCTACATTCAGATGTTGAGGCTGAAATAAGACATGAtgaggcagagagaggagatgCTCTCGTTCCTCATCATCAAATGAAAGATGAAAGCTGCAATGGAGGCGGAAATATTAAGCACTTGAATGACAATATATTAAAGAAAATCTGCACTGATACGGTTTGGAAGAAACCTATCAACCTTTCTGGGGAACTGGAAAAACAGCCTAGCCAGAGAGCAACATGTGCGAGGACACATAAAGAAAATGTTCTTTATACAGACACTGGAGCAGATGGAGACagtttgcaaagaaaaaggTCAGACTTTGCAAAGCTAAAAGAAGATGGAGGACCAAAAagccatgagccaatcagacaGCAGCTTGATACAAACTCAGAGGAGCACATGTGGAATCCGAACACCAGACGGACCCCCACAACACACCAGTTAGGCCGTATGTTAGAGCAAAAGCATTCATCCCCAAATAAAAGACTGAAAGGAAATGAGACTATCCAGGAAACACAGAACAATTTTGTTGCAGAAACTGGAACAAGTTTGACTGATAGTACAAGAAATGGCATCAAACCTAATTCATTTCATGTTTCCTCCAATGGctactcttcttctttagttccATACTTGACAGGACACTTGCAAGGCCAGTTTAAAATTAAAGAACCAACAGAGTATAACTATCTACCAAACCTATGCAGGAAACCAAACAGTTCAAAGAGAGACGAGGAGAGAATGCACCATGCTGTAACTGCAGACAGAAGCTGCAAACCGGAGACCAAACTAACTGTGAAAAAGGCCAAGGGGGGAGTTCAAGATGATCGACCTGTAAAAGATCAATACAGGTATGGAGGTTTGTCTGGGAGCCACACCATCACTGCAGGCGATGAAGTAAGAGCTCGTCTTCAGGCACTCAGGAGTGAGTTTCAGGCACACGAAGCAGAACTCGACCTGACAGCGAGGACAGATTATGTTCTTACAGCCCGTTTTGTCATGCTCCACTCTCTGACCACAGGTGGGACAGGCCCGGATGGAGGGACATGCGTCGACCCCCTCCACCTGAGGGAGGGCGGTGGTCTTGCAGTTCTTGAGGAGCTCGAGGTCGTGGTTGATGCAGCCGTCATTGTCGCAGCGGTCAGAGCGTGGAGCTGCACCTTTCCACACCATCAAACATTGCCAGCAGAACTGGTGGAGATAACAGGGACACTCACTGTTTTGAAGTCACAGTATTCTGTGGCAGCTAGGCGGGCGATGTTCTCTTCAAAGTACTGCATCTCTTCAGCTGTCAGCACTGCCAGCCTGCGCACCTCTTGgagaggaGGCTCTGCGGCTGATCTTCACAGACAAGATGCTGGATGGAAACTCCGAGCTGCTGACTGGATTTGGAATCCAGCACATGTCTGTCATCCACATGGTGGTGAAGGTTCCTGGAGGGTTGACCGCTTGACAGAGACGACCATTTCCTCCTGCTGCTGTTTacacattttaaagctttaggctactgtatatgcTGTTTTATGCAATACTCATTTGATATTCCCATGTTTTAAGCTGTTGCTGTTGTACAAATAAAGTTCTGCCTAATGCCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194367 lncRNA downstream 40870 18016249 ~ 18019306 (-) True G144037
XR_005641476.1 lncRNA downstream 57705 17992145 ~ 18002471 (-) True LOC120572704
TU194329 lncRNA downstream 170524 17887278 ~ 17889652 (-) True G144013
TU194197 lncRNA downstream 206362 17852399 ~ 17853814 (-) False smim20
TU194173 lncRNA downstream 296471 17762380 ~ 17763705 (-) True G143898
TU194570 lncRNA upstream 95749 18169293 ~ 18173021 (-) False mrpl52
XR_005641738.1 lncRNA upstream 174899 18248443 ~ 18250057 (-) True LOC120573605
TU194639 lncRNA upstream 462603 18536147 ~ 18539581 (-) False c14h4orf48
TU194691 lncRNA upstream 626665 18700209 ~ 18700555 (-) True G144275
TU194729 lncRNA upstream 754920 18828464 ~ 18830315 (-) True G144303
XM_039821294.1 mRNA downstream 680 18054578 ~ 18059496 (-) False LOC120572147
XM_039821293.1 mRNA downstream 680 18054578 ~ 18059496 (-) True LOC120572147
XM_039823006.1 mRNA downstream 8098 18043910 ~ 18052078 (-) False oxa1l
XM_039823005.1 mRNA downstream 8098 18043910 ~ 18052078 (-) True oxa1l
XM_039822060.1 mRNA downstream 37256 18019616 ~ 18022920 (-) True LOC120572700
XM_039821852.1 mRNA upstream 10836 18084380 ~ 18095954 (-) True LOC120572515
XM_039823614.1 mRNA upstream 53220 18126764 ~ 18133498 (-) False LOC120573701
XM_039823613.1 mRNA upstream 53220 18126764 ~ 18133498 (-) True LOC120573701
XM_039823615.1 mRNA upstream 53220 18126764 ~ 18133488 (-) False LOC120573701
XM_039823398.1 mRNA upstream 61875 18135419 ~ 18143670 (-) True lrp10
XR_005641649.1 other downstream 239099 17766500 ~ 17821077 (-) False rbpjb
TU194183 other downstream 307187 17744954 ~ 17752989 (-) False tbc1d19
TU194121 other downstream 810622 17247951 ~ 17249554 (-) False LOC120572513
TU194122 other downstream 810622 17248088 ~ 17249554 (-) False LOC120572513
XR_005641408.1 other downstream 2016857 16019657 ~ 16043319 (-) True acap1
TU194399 other upstream 40308 18113852 ~ 18123690 (-) True G144058
TU194667 other upstream 521558 18595102 ~ 18597231 (-) True G144258
unassigned_transcript_702 other upstream 621155 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 622552 18696096 ~ 18696169 (-) True trnan-guu_12
unassigned_transcript_704 other upstream 624718 18698262 ~ 18698335 (-) True trnan-guu_13

Expression Profile